Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02009 ATGGTGTGTTCTAGGGCTGGAAAACATGTCTCCTCCAATCAGTATGAAATGATTGGATGTCCAACACAGGCTAATGATTGTGGAACTCGAATTATTGTATCAAAAAGAGATGAGAAGTGGTACATTTCAGCATTTGATGATGTACATACTCATGATCTTAGTCCAACAAAGTCAAGATTGTTCCGAGGCAATAAAAGCATGAATTTGAACGTTAAAAGAACACTAGACTTAAATGCCGAAGCAGGAGTTGGGATTAACAAGAGTTTTTGGTCCTTGGTTTGTGCTACAGGAGGTTATAAGAACTTGGAGTTTGTCGAACATGATGTTAGAAATTATGTGGCCAAACAAAGAAGAGAATTATCAAAAGATGGTGATGCCAAGGCACTCTTAAACTATTTCTCTTCCATGAGAGAATTCAATAAGGATTTCTTTTTCGACATTGATGTTGATGACAACAACAACATACTGAATGTTAGGGCAGCTTGTGAGTATTTTGGTGATGTCATCTCTTTTGACACAACATACTTAACGAATAAGTACGACATGTCGTTTGCTCCTTTCGTTGGTGTCAACCACCATGAAAATAAATCATCATATTACAAGGTGACGGAGGACTCCATTCATAATGAAATAAGGGAAGAGAGGGTATTCATGGTTACATTTGAACGAGACACAATGAATGTCAATTGCAGTTGTTTGCTTTTTGAGTTTAGGGATATTATTTGTAGACATTGTGTATGTGTCCTAGCACAAGAAAAACACACGTATATTAAAGCAACATACAACAACAAAGAAAAGGATCCACATATTGAACGGTATGATAACTTATGCAAGACTTTTGGAGATATTGCTGAGATTGGCTGTGAGTCAATAAAGATGACAAAATTATTGGTTGACAACCTTAGATCATTTGTGAACAAGCATGGCCTAGAAATTTCACCTTCACCATACGTTAACAACAACATTCATAAAGAACAACAACACCTGCATCATAGTAACATAGGTCATGATATAGACACAAATCAAAATAATGTTGCAATCGAAAGCCCTAAAGCTGTGAACCAAAAGGGTCAACCTAGGACAAAAAGGTTGAAATCAACATCTGAAAGACTAACAACAAAGAAACTATTGGAAAACAGGTTGGCTTTGTTTTTACACCAAGAGTGGGGGTGA 1173 0.3657 MVCSRAGKHVSSNQYEMIGCPTQANDCGTRIIVSKRDEKWYISAFDDVHTHDLSPTKSRLFRGNKSMNLNVKRTLDLNAEAGVGINKSFWSLVCATGGYKNLEFVEHDVRNYVAKQRRELSKDGDAKALLNYFSSMREFNKDFFFDIDVDDNNNILNVRAACEYFGDVISFDTTYLTNKYDMSFAPFVGVNHHENKSSYYKVTEDSIHNEIREERVFMVTFERDTMNVNCSCLLFEFRDIICRHCVCVLAQEKHTYIKATYNNKEKDPHIERYDNLCKTFGDIAEIGCESIKMTKLLVDNLRSFVNKHGLEISPSPYVNNNIHKEQQHLHHSNIGHDIDTNQNNVAIESPKAVNQKGQPRTKRLKSTSERLTTKKLLENRLALFLHQEWG 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02009 390 ProSiteProfiles Zinc finger SWIM-type profile. 217 253 IPR007527 GO:0008270
Vimu10g02009 390 PANTHER OS01G0519700 PROTEIN 2 170 - -
Vimu10g02009 390 Pfam SWIM zinc finger 228 249 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02009 Vimu-Chr10 29412120 29414085 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vimu10g02009 SWIM 0.00089 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02009 - - vra:106770356 332.028