Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02007 ATGGGTTCAACGGGGGAGACTCAGATCACTCCAAGCCATGTGTCTGATGAAGAGGCAAACCTGTTTGCGATGCAACTGGCGAGTGCCTCTGTCCTCCCAATGGTTCTGAAATCAGCCATCGAGCTTGATCTGCTGGAAATCATAGCCAAGGCTGGCCCTGGAGTTCATCTTTCTCCCTCTCACATTGCTTCTCAGCTCCCAACAAAAAACCCTGAGGCACCGGTCATGTTGGACCGCATCTTGCGTCTATTGGCTTCATACAACATCCTCACTTTCACCCTCCACACTCTCCCTGATGGTAAGGTTGAGAGGCTCTATGGCCTTGCTCCTGTTGCCAAGTACTTGGTCAAAAACGAAGATGGCGTCTCCTTGGCTGCTCTCAACCTCATGAACCAGGATAAAATCCTCATGGAAAGCTGGTACTACTTGAAAGATGCAGTTCTCGAAGGGGGGATTCCATTTAACAAGGCATATGGAATGACAGCCTTTGAATACCATGGAAAGGATCCAAGGTTTAACAAGGTTTTCAACAAGGGTATGGCCGATCACTCTACCATCACAATGAAGAAAATTCTCGAGACCTATACAGGCTTTGAGGGTATTAAATCTCTGGTTGATGTTGGTGGTGGAACTGGAGCTATAATAAATATGATAGTCTCAAAGTATTCCAATATCAAGGGTATTAATTTTGATTTACCCCATGTCATCGAAGATGCCCCATCTTATCCAGGAGTGAAGCATGTGGGTGGAGACATGTTTGTCAGTGTTCCAAAAGCCGACGCTATTTTTATGAAGTCTGATAATCGTGTTCTACTTGTTTATGCTAATGATTTTAATATCATTGATACCTCCAGTGGATTTGCCACGATTGGATTTTTGAAGAACTGCTACGATGCATTACCAGAAAACGGGAAGGTGATAGTGGCAGAATGCATTCTTCCAGTGGCTCCAGACTCTAGCTTGGCCACAAAGGGTGTGGTTCATATAGATGTGATAATGTTGGCTCATAATCCAGGTGGGAAAGAGAGAACAGAGAAAGAGTTTGAGGCTCTGGCCAAAGGATCTGGATTCCAAGGTTTCCGAGTTCTCTGCTCTGCTTTCAATACCTACATCATCGAGTTTCTCAAGAAGGTTTAA 1137 0.4485 MGSTGETQITPSHVSDEEANLFAMQLASASVLPMVLKSAIELDLLEIIAKAGPGVHLSPSHIASQLPTKNPEAPVMLDRILRLLASYNILTFTLHTLPDGKVERLYGLAPVAKYLVKNEDGVSLAALNLMNQDKILMESWYYLKDAVLEGGIPFNKAYGMTAFEYHGKDPRFNKVFNKGMADHSTITMKKILETYTGFEGIKSLVDVGGGTGAIINMIVSKYSNIKGINFDLPHVIEDAPSYPGVKHVGGDMFVSVPKADAIFMKSDNRVLLVYANDFNIIDTSSGFATIGFLKNCYDALPENGKVIVAECILPVAPDSSLATKGVVHIDVIMLAHNPGGKERTEKEFEALAKGSGFQGFRVLCSAFNTYIIEFLKKV 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02007 378 Pfam Dimerisation domain 34 85 IPR012967 GO:0046983
Vimu10g02007 378 PANTHER O-METHYLTRANSFERASE 23 357 IPR016461 GO:0008168
Vimu10g02007 378 FunFam Caffeic acid O-methyltransferase 116 376 - -
Vimu10g02007 378 Gene3D - 1 115 IPR036388 -
Vimu10g02007 378 FunFam Caffeic acid 3-O-methyltransferase 3 115 - -
Vimu10g02007 378 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 24 376 IPR016461 GO:0008168
Vimu10g02007 378 SUPERFAMILY "Winged helix" DNA-binding domain 15 119 IPR036390 -
Vimu10g02007 378 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 120 374 IPR029063 -
Vimu10g02007 378 PIRSF O-mtase 1 377 IPR016461 GO:0008168
Vimu10g02007 378 Gene3D Vaccinia Virus protein VP39 116 376 IPR029063 -
Vimu10g02007 378 Pfam O-methyltransferase domain 140 358 IPR001077 GO:0008171
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02007 Vimu-Chr10 29385817 29387272 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02007 1 378 Monolignol Biosynthesis Gene Families AT5G54160 72.222 0.0 558
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02007 K13066 - gmx:100780100 648.277
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02007 10 29385817 29387272 Vimu10g02007 10 29385817 29387272 ECH