Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02005 ATGGGTTCAACGGGTGAGACTCAGATTACTCCAAGCCATGTGTCTGATGAAGAGGCAAACCTGTTTGCGATGCAACTGGCGAGTGCCTCTGTCCTCCCAATGGTTCTGAAATCAGCCATCGAGCTTGATCTGCTGGAAATCATAGCCAAGGCTGGCCCTGGAGTTCATCTTTCTCCCTCTCACATTGCTTCTCAGCTCCCAACAAAAAACCCTGAGGCACCGGTCATGTTGGACCGCATCTTGCGTCTATTGGCTTCCTACAACATCCTCACTTTCACCCTCCACACTCTCCCTGATGGTAAGGTTGAGAGGCTCTATGGCCTTGCTCCTGTTGCCAAGTACTTGGTCAAAAACGAAGATGGCGTCTCCTTGGCTGCTCTCAACCTCATGAACCAGGATAAAATCCTCATGGAAAGCTGGTACTACTTGAAAGATGCAGTTCTCGAAGGGGGGATTCCATTTAACAAGGCATATGGAATGACAGCCTTTGAATACCATGGAAAGGATCCAAGGTTTAACAAGGTTTTCAACAAGGGTATGGCCGATCATTCTACCATCACAATGAAGAAAATTCTCGAGACCTATACAGGCTTTGAGGGTATTAAATCTCTGGTTGATGTTGGGGGTGGAACTGGAGCTATAATAAACATGATAGTCTCAAAGTATCCCAATATCAAGGGTATTAATTTTGATTTACCCCATGTCATCGAAGATGCCCCATCTTATCCAGGAGTGGAGCATGTGGGTGGAGACATGTTTGTCAGTGTTCCAAAAGCTGATGCTATTTTTATGAAGTGGATTTGCCACGATTGGAGTGATGAACACTGCTTGAAGTTTTTGAAGAACTGCTACGATGCTTTACCAGAAAATGGAAAGGTGATTGTGGCAGAATGCATTCTTCCAGTGGCTCCAGACTCTAGCTTGGCCACAAAGGGTGTGGTTCATATAGATGTGATAATGTTGGCTCATAATCCAGGTGGGAAAGAGAGAACAGAGAAAGAGTTTGAGGCTCTGGCCAAAGGATCTGGATTCCAAGGTTTCCGAGTTCTGTGCTCTGCTTTCAATACCTACATCATAGAGTTTCTCAAGAAAGTTTAA 1098 0.4526 MGSTGETQITPSHVSDEEANLFAMQLASASVLPMVLKSAIELDLLEIIAKAGPGVHLSPSHIASQLPTKNPEAPVMLDRILRLLASYNILTFTLHTLPDGKVERLYGLAPVAKYLVKNEDGVSLAALNLMNQDKILMESWYYLKDAVLEGGIPFNKAYGMTAFEYHGKDPRFNKVFNKGMADHSTITMKKILETYTGFEGIKSLVDVGGGTGAIINMIVSKYPNIKGINFDLPHVIEDAPSYPGVEHVGGDMFVSVPKADAIFMKWICHDWSDEHCLKFLKNCYDALPENGKVIVAECILPVAPDSSLATKGVVHIDVIMLAHNPGGKERTEKEFEALAKGSGFQGFRVLCSAFNTYIIEFLKKV 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02005 365 Gene3D - 1 115 IPR036388 -
Vimu10g02005 365 Gene3D Vaccinia Virus protein VP39 116 363 IPR029063 -
Vimu10g02005 365 CDD AdoMet_MTases 204 295 - -
Vimu10g02005 365 FunFam Caffeic acid O-methyltransferase 116 363 - -
Vimu10g02005 365 FunFam Caffeic acid 3-O-methyltransferase 3 115 - -
Vimu10g02005 365 PANTHER O-METHYLTRANSFERASE 23 344 IPR016461 GO:0008168
Vimu10g02005 365 Pfam Dimerisation domain 34 85 IPR012967 GO:0046983
Vimu10g02005 365 PIRSF O-mtase 1 364 IPR016461 GO:0008168
Vimu10g02005 365 Pfam O-methyltransferase domain 140 345 IPR001077 GO:0008171
Vimu10g02005 365 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 24 363 IPR016461 GO:0008168
Vimu10g02005 365 SUPERFAMILY "Winged helix" DNA-binding domain 15 119 IPR036390 -
Vimu10g02005 365 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 120 361 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02005 Vimu-Chr10 29337620 29339106 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02005 1 365 Monolignol Biosynthesis Gene Families AT5G54160 78.082 0.0 603
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02005 K13066 - gmx:100780100 699.893