Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01991 ATGACTTCCCTCGAGTGTTATCCCTCGCGCGGGGACGATGTCGCCGTCGTGTCGCTGGATTCTCTACCTTTAGGGTTCCGATTCAGACCTACCGATGAGGAGCTCATCGATTACTACCTGCGGCAGAAGATTAACGGCAATGGTGCCGAGGTTTGGGTTATCCGAGAAATTGATGTCTGCAAATGGGAGCCGTGGGACATGCCTGGATTAGGATTTCGACTTAATTCAATCGAAAAGTTAGTTGGTGTTGGTGTTGGCTCGACATGTCTGGGGACATGGGATTTGTCGGTGATACGGAACAAGGATCCGGAATGGTTCTTCTTCTGTCCACAGGACAGAAAGTACCCAAATGGGCATCGATTGAACAGAGCAACTAGTCATGGGTATTGGAAGGCGACCGGGAAGGATCGTAAAATAAAGTCGGGGATGATTTTGATTGGAATGAAGAAGACTTTGGTGTTCTACACTGGTCGTGCACCCAAAGGGAAGAGGACCAATTGGGTTATGCACGAGTATCGCCCCACCTTGAAGGAGCTTGATGGCACCAATCCTGGACAGAATGCATATGTCCTTTGTCGCTTGTTTAAAAAACACGATGAGAGCCTTGAAGTTTCTCACTGTGATGAGGCAGAACAGACCCCTTCAACTCCGATTGCTGCCAATTACTCTACGGAGGAAATACAGTCGGGTCTGGGTGTTGTTGCATTGTCCCCATCCCTTGTTACAGAGGACGATAAGCACCAGACAATTGTCCCTACGCGGTCTGAGGAAGCAATATCCAACGTTATAACTCCGGTTGATTGCCATAGTGATGGATTTGATGGTTCTGATGCACAAAATCCAGCTGGCGAGGAGTTTCAGCCATGGAACTTTGATATGTGTTACGACCCAAAAAACGAGCTCTTGGATGACAAGTTATTCTCCCCTGAACTTGCACATGTTCAACCAGAATTTCATTATCAACCAAACAGTGAATCAGATAGTCGGTATGGGCTTCAATCTGGCACTAATGAGACAAACATTTCAGACTTTTTGAATTCTGTTGTTAACTGGGACGAACTACCCTACGAGGAGCCCAATTGTCAACAGTGGACCTACCCCTCGTTTAATGTTCAGAATAGCGAATTAGGCAGCGATATAGATACTGAACTTGCCAATATAATATATATGCAAGCTGGTTACGCTGAGGAGGCAAACGACAGAAAGATTCCTTTGGTGATAGCTCCAGAATTTTGCAGCACCTCTGGCATCCCCATTGCCCGTGGTGGAGATGAGCAGAAGAGCAATGTTGAGTTATTTCAAAGCATTTCCCAGAGAGATTTTACTGATGTCAATATGGGCCAAGTATACAATGCAGTCAATGATTATCCGCCACCCAGAATCTATAATACAGTTCCTAGTGGGGATACCGGAATCATTAGGAGGACTCGAGTGGTTCAAACTGAAAAGCTAAGTGCAAACGTAACACAAGGTACAGCACAGAGGAGAATTCGTTTGGCGAAGAAGGCGCAAAATAAGATGGTGAAAAAAGAGCTTGATTCAAAACCAATCATTGCTGTGGAGGAGAAAGCTTCAGAAAACCATGTTTTGGATGGAAGTGCTACACTTACTAATGATGGGAATGAACTGCAGAAGACACCAGAGGCAAATGGCAATAGAAAGACTTCTCGTCAAGTTGCAAAAGCAAGTTCTACCTTTGGGTTGAAAGATTTTTTATTGCTCAGAAGGGTGCCAAACATTTCAAAGGCTACCTCCAATGGTACCAAGTGCTCTTCTATTTTTGTAGTTTCTGCCTTTCTAATGGTCTCATTAGTGGTCTTTACTGACATCTGCGGATATCTTAAATTCTAA 1851 0.4484 MTSLECYPSRGDDVAVVSLDSLPLGFRFRPTDEELIDYYLRQKINGNGAEVWVIREIDVCKWEPWDMPGLGFRLNSIEKLVGVGVGSTCLGTWDLSVIRNKDPEWFFFCPQDRKYPNGHRLNRATSHGYWKATGKDRKIKSGMILIGMKKTLVFYTGRAPKGKRTNWVMHEYRPTLKELDGTNPGQNAYVLCRLFKKHDESLEVSHCDEAEQTPSTPIAANYSTEEIQSGLGVVALSPSLVTEDDKHQTIVPTRSEEAISNVITPVDCHSDGFDGSDAQNPAGEEFQPWNFDMCYDPKNELLDDKLFSPELAHVQPEFHYQPNSESDSRYGLQSGTNETNISDFLNSVVNWDELPYEEPNCQQWTYPSFNVQNSELGSDIDTELANIIYMQAGYAEEANDRKIPLVIAPEFCSTSGIPIARGGDEQKSNVELFQSISQRDFTDVNMGQVYNAVNDYPPPRIYNTVPSGDTGIIRRTRVVQTEKLSANVTQGTAQRRIRLAKKAQNKMVKKELDSKPIIAVEEKASENHVLDGSATLTNDGNELQKTPEANGNRKTSRQVAKASSTFGLKDFLLLRRVPNISKATSNGTKCSSIFVVSAFLMVSLVVFTDICGYLKF 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01991 616 SUPERFAMILY NAC domain 18 197 IPR036093 GO:0003677|GO:0006355
Vimu10g01991 616 Gene3D NAC domain 31 201 IPR036093 GO:0003677|GO:0006355
Vimu10g01991 616 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 21 287 - -
Vimu10g01991 616 ProSiteProfiles NAC domain profile. 22 197 IPR003441 GO:0003677|GO:0006355
Vimu10g01991 616 MobiDBLite consensus disorder prediction 532 558 - -
Vimu10g01991 616 Pfam No apical meristem (NAM) protein 23 173 IPR003441 GO:0003677|GO:0006355
Vimu10g01991 616 FunFam Nac domain-containing protein 86 31 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01991 Vimu-Chr10 29029813 29032933 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01991 14 239 NAC Transcription Factor Family AT4G35580 59.735 9.06e-85 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vimu10g01991 NAM 1.3e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01991 - - gmx:100777071 909.442