Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01982 ATGAAGACGATTCTCTCATCGGAAACGATGAATATTCCCGATGGCGTGAGCATCAAGGTTCACGCCAAGGTGATCGAGGTTGAAGGCCCTCGTGGAAAACTAGTGCGAGACTTCAAACATCTCAACCTTGATTTTCAGCTCATCACCGACGAGAACGGCAAGAAGAAGCTCAAGATCGACGCCTGGTTTGGTTCTCGGAAAACCTCCGCCGCCATTCGCACCGCCCTCAGCCACGTCGACAATCTGATCACCGGCGTCACCAAGGGCTACCGCTACAAGATGAGGTTCGTGTACGCTCACTTCCCTATCAACGCCAGCATTGCCAACGACAATAAGTCCATTGAAATCCGAAATTTCCTCGGCGAGAAGAAGGTGAGAAAAGTTGACATGCTGGAGGGTGTGTCCGTTGTTCGATCTGAAAAGGTTAAGGATGAGTTGGTTTTGGATGGAAACGATATCGAACTTGTCTCCCGGTCTTGTGCTCTGATAAACCAGAAATGTCATGTTAAGAACAAGGATATTCGGAAGTTCCTTGATGGTATCTACGTAAGCGAGAAGGGAACAATAATAGTAGATGAGTAG 582 0.4811 MKTILSSETMNIPDGVSIKVHAKVIEVEGPRGKLVRDFKHLNLDFQLITDENGKKKLKIDAWFGSRKTSAAIRTALSHVDNLITGVTKGYRYKMRFVYAHFPINASIANDNKSIEIRNFLGEKKVRKVDMLEGVSVVRSEKVKDELVLDGNDIELVSRSCALINQKCHVKNKDIRKFLDGIYVSEKGTIIVDE 193
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01982 193 FunFam 60S ribosomal protein L9 1 89 - -
Vimu10g01982 193 Gene3D - 90 193 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Vimu10g01982 193 PANTHER 60S/50S RIBOSOMAL PROTEIN L6/L9 1 189 IPR000702 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Vimu10g01982 193 PIRSF RPL6p_RPL6a_RPL9e_RPL9o 1 189 IPR000702 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Vimu10g01982 193 FunFam 60S ribosomal protein L9 90 193 - -
Vimu10g01982 193 SUPERFAMILY Ribosomal protein L6 1 89 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Vimu10g01982 193 ProSitePatterns Ribosomal protein L6 signature 2. 165 186 IPR002359 GO:0003735|GO:0005840|GO:0006412
Vimu10g01982 193 SUPERFAMILY Ribosomal protein L6 90 186 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Vimu10g01982 193 Gene3D - 1 89 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Vimu10g01982 193 Pfam Ribosomal protein L6 12 89 IPR020040 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Vimu10g01982 193 Pfam Ribosomal protein L6 101 180 IPR020040 GO:0003735|GO:0005840|GO:0006412|GO:0019843
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vimu10g01982 Vimu-Chr10 28858249 28859033 Proximal
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01982 1 193 Cytoplasmic Ribosomal Protein Gene Family AT1G33140 86.598 1.90e-123 345
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01982 K02940 - gmx:100306058 365.54
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g01982 10 28858249 28859033 Vimu10g01982 10 28858249 28859033 ECH