Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01978 ATGCTAAGAATAAGAATAAGTGTTTCATCCACTCAGGGGTCCATTTGCAGCCACTTCCCTCCAGATGTAGTATTTATTGTACAAGGAAAACGTATTCAAACTCACAGAGTCATATTAAGTGCAAGATCACCATTTTTCAAGAAAAAGTTTACTACTGATTGGAAGGATCGCAATGAAGTTAGATTCTCGAAGGAAAGGTTGTCATATCCTGCACTTTATAGCCTTATACACTTCTTTTATTCAGACAGATTAGAGATTGCCATTGATGACATGGAGGATCTTGTGAGAATCTGCAAAGTATGCAGATGTGAATCACTGCATAAAGTTATTGAGAAAGAACTAATTCATCAAAAATATGCAGACTATAAAGCGCTGGGAAATGTAGATAATTCTCAGAAACGGTATATTTTACAAGGTCTATCCCTTCCTGAAGAAGACAGGCTTCCTGCTGCCTTGCATCGAATCCTTCTGACTGCTCTTTCAAATTCAACCCATGAAAGTGGTGAAGAAGATAAATTGATTTCTATGATGGATGCCATGCAGATGGAGAAATCTGTGGATGATCTTGCTGATGTTTGTGTAAAAGTTGATAGAAATATTTTCCGCTGTCATCAAGTTATTCTAGCATCCAGGTCAGAATACTTCAGAGCAAGATTATCACATATGAAGAACTTCCATGAGGGAAAATATGAGTTATCTGTTGACACTCTTCCTTGTGTAGAAGAACATGACTTAAGCAAGGAGGCTTTTGAGAAAATGATTGAATATATGTAA 774 0.3682 MLRIRISVSSTQGSICSHFPPDVVFIVQGKRIQTHRVILSARSPFFKKKFTTDWKDRNEVRFSKERLSYPALYSLIHFFYSDRLEIAIDDMEDLVRICKVCRCESLHKVIEKELIHQKYADYKALGNVDNSQKRYILQGLSLPEEDRLPAALHRILLTALSNSTHESGEEDKLISMMDAMQMEKSVDDLADVCVKVDRNIFRCHQVILASRSEYFRARLSHMKNFHEGKYELSVDTLPCVEEHDLSKEAFEKMIEYM 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01978 257 ProSiteProfiles BTB domain profile. 21 88 IPR000210 GO:0005515
Vimu10g01978 257 CDD BTB_POZ_ZBTB_KLHL-like 189 257 - -
Vimu10g01978 257 SMART BTB_4 21 118 IPR000210 GO:0005515
Vimu10g01978 257 ProSiteProfiles BTB domain profile. 190 257 IPR000210 GO:0005515
Vimu10g01978 257 Gene3D Potassium Channel Kv1.1; Chain A 164 257 IPR011333 -
Vimu10g01978 257 FunFam BTB/POZ domain-containing protein 15 137 - -
Vimu10g01978 257 SUPERFAMILY POZ domain 16 116 IPR011333 -
Vimu10g01978 257 Gene3D Potassium Channel Kv1.1; Chain A 11 136 IPR011333 -
Vimu10g01978 257 PANTHER ANKYRIN REPEAT AND BTB/POZ DOMAIN-CONTAINING PROTEIN 1 18 257 IPR044515 -
Vimu10g01978 257 Pfam BTB/POZ domain 188 257 IPR000210 GO:0005515
Vimu10g01978 257 Pfam BTB/POZ domain 19 117 IPR000210 GO:0005515
Vimu10g01978 257 SUPERFAMILY POZ domain 176 257 IPR011333 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Vimu10g01978 BTB 3.5e-18 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01978 K10520 - gmx:100812009 429.483