Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01975 ATGGATGATAGTGACTTTTTTCTTTCAGCAATGGGAGATGAGGTGATTCTGTTGAATTTCTGGTTAAGCCCTTATGGGATGAGGGTCCGGATTGCACTAGAGGAAAAGGGCATCAAGTATGAAAACAGAGAAGAGGACTTTAGCAACAAGAGCTCTTTACTCTTCCAAATGAACCCAGTTCATAAGAAAATACCAGTTCTCATCCACAATAGCAAACCCATTTGTGAGTCACTGATTGCTGTTGAGTACATTGACGAGGTTTGGAATGAACAATCTCCCTTGTTGCCTTCTAATCCTTACCAGAGAGCACAAGCAAGATTCTGGGCTAACTATGTTGACACTGTGGTATATAAGCATGCCATGAGGTTTTGGACAACTGAAGGAGAAGAGAGAGAGGCTGCTGGGCAAGAATTTTTGGAGTGTCTGAAGTTATTGGAAGAACAACTTGGGGATGAGCCTCATTTTGGTGGAAACAACTTTGGTTTCGTGGATGTTGCACTTGTTCCTTTGTTCTGTTATTTTTATACTTTTAACTTATATGGCAATTTCATCAGCGAGGCACAGTACCCCAAAATCATTTCTTGGGCCAGGAGGTGCACCCAAAGAGAGAGTGTGTCCAAAAGTTTTCCCCAGGAGCAGATGGTCAAAGACTATGTTTCCCAGAAGAGAAACAAAGGGTAG 681 0.4229 MDDSDFFLSAMGDEVILLNFWLSPYGMRVRIALEEKGIKYENREEDFSNKSSLLFQMNPVHKKIPVLIHNSKPICESLIAVEYIDEVWNEQSPLLPSNPYQRAQARFWANYVDTVVYKHAMRFWTTEGEEREAAGQEFLECLKLLEEQLGDEPHFGGNNFGFVDVALVPLFCYFYTFNLYGNFISEAQYPKIISWARRCTQRESVSKSFPQEQMVKDYVSQKRNKG 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01975 226 CDD GST_C_Tau 99 215 IPR045074 GO:0004364|GO:0006749
Vimu10g01975 226 Gene3D Glutaredoxin 11 97 - -
Vimu10g01975 226 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 98 218 IPR010987 -
Vimu10g01975 226 SFLD Main.3: Omega- and Tau-like 12 224 IPR045073 -
Vimu10g01975 226 Gene3D - 98 226 - -
Vimu10g01975 226 FunFam Tau class glutathione S-transferase 10 97 - -
Vimu10g01975 226 Pfam Glutathione S-transferase, N-terminal domain 15 86 IPR004045 -
Vimu10g01975 226 FunFam Glutathione S-transferase U20 98 226 - -
Vimu10g01975 226 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 13 92 IPR004045 -
Vimu10g01975 226 SUPERFAMILY Thioredoxin-like 15 116 IPR036249 -
Vimu10g01975 226 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 18 213 IPR045073 -
Vimu10g01975 226 SUPERFAMILY GST C-terminal domain-like 86 222 IPR036282 -
Vimu10g01975 226 CDD GST_N_Tau 15 88 - -
Vimu10g01975 226 Pfam Glutathione S-transferase, C-terminal domain 130 198 - -
Vimu10g01975 226 SFLD Main (cytGST) 12 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01975 Vimu-Chr10 28788784 28789717 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01975 11 225 Glutathione S-transferase Gene Family AT1G78380 54.884 3.91e-93 270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01975 K00799 - gmx:100776076 358.607