Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01959 ATGGCAGCGGTGGTGGAGGCGAGGAAGGCCCCGCGGCGGGGAAAGGGCGGTTACGAAGCGCACGGCCTGAGCGAGGAAGAAGCGCGTGTTCGAGCAATCTCGGAGATCGTGAACTCCACGGTAGACCTCTCCCACAAGGGTCAGAACGTGGACCTCAACGCGCTAAAGTCCGCAGCGTGCCGCAAGTACGGTCTCGCACGCGCGCCTAAGCTAGTGGAGATGATAGCCGCGCTCCCCGATGCGGAGCGCGAAACTCTCCTCCCCAAGCTCCGTGCCAAACCTGTCCGCACCGCCTCCGGAATCGCCGTAGTTGCCGTCATGTCCAAACCGCACCGCTGCCCGCACATCGCCACCACCGGGAACATCTGCGTTTACTGCCCTGGCGGTCCCGACTCCGACTTCGAGTACAGTACTCAGTCCTACACCGGTTACGAACCAACCAGCATGCGTGCGATTCGTGCGAGGTATAATCCATATGTTCAGGCAAGGAGCAGGATAGATCAGCTTAAGCGTTTGGGTCATAGCGTAGACAAGGTTGAGTTTATCTTAATGGGTGGTACCTTCATGTCTCTTCCAGCTGATTACCGTGATTACTTTATAAGAAATCTTCACGATGCTTTGTCTGGGCATACTTCTGTCAATGTGGAAGAGGCAGTAGCTTACTCTGAGCATGGAGCAACCAAATGTATTGGCATGACAATTGAAACGAGGCCAGATTATTGTCTTGGGCCTCACTTGCGCCAAATGCTTTCTTATGGTTGTACACGATTGGAGATTGGAGTCCAAAGCACCTATGAGGATGTTGCCCGAGACACAAACAGAGGACACACTGTAGCTGCTGTAGCTGATTGCTTTTCCTTGGCTAAAGACGCTGGTTTCAAGGTTGTTGCTCACATGATGCCTGATCTTCCAAATGTTGGTGTTGAGAGGGACATGGAAAGTTTTCGGGAGTTTTTTGAGAGTCCCTTGTTTAGAGCGGATGGGCTTAAAATATATCCTACACTTGTAATTCGTGGAACAGGGCTTTATGAGCTCTGGAAAACTGGCAGGTATAGAAATTATCCACCAGAGCAACTTGTGGACATCATAGCAAGGATCCTTGCAATGGTACCACCATGGACACGTGTTTATAGAGTTCAGCGGGATATTCCTATGCCTTTGGTTACCTCCGGGGTTGAGAAAGGGAATTTGAGGGAGCTAGCATTAGCTCGAATGGAAGACTTGGGATTGAAATGTCGTGATGTTCGGACCAGGGAAGCTGGAATCCAGGATATTCACCACCAAATTAGGCCAGAGGAGGTGGAGCTTGTTCGGCGTGATTATATGGCAAATGAGGGTTGGGAAACATTTCTATCATATGAAGATACACGACAAGATATCCTTGTTGGTTTGTTGCGTCTGCGAAAATGTGGCCGCAATACTACATGTCCAGAGCTTATGGGGAAGTGTTCAATTGTTCGTGAACTCCATGTTTATGGGACTGCCGTACCAGTTCATGGACGGGATGCTGACAAGCTACAACACCAGGGTTATGGTACACTTTTAATGGAGGAGGCAGAGCGTATTGCTTGCAGAGAACACAGATCAACAAAAATAGCTGTAATTTCAGGGGTGGGCACACGCCATTATTACAGGAAACTGGGATATGAGCTTGAAGGACCTTACATGGTGAAATATTTAGCGAAATAA 1689 0.4973 MAAVVEARKAPRRGKGGYEAHGLSEEEARVRAISEIVNSTVDLSHKGQNVDLNALKSAACRKYGLARAPKLVEMIAALPDAERETLLPKLRAKPVRTASGIAVVAVMSKPHRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSVDKVEFILMGGTFMSLPADYRDYFIRNLHDALSGHTSVNVEEAVAYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFSLAKDAGFKVVAHMMPDLPNVGVERDMESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIIARILAMVPPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARMEDLGLKCRDVRTREAGIQDIHHQIRPEEVELVRRDYMANEGWETFLSYEDTRQDILVGLLRLRKCGRNTTCPELMGKCSIVRELHVYGTAVPVHGRDADKLQHQGYGTLLMEEAERIACREHRSTKIAVISGVGTRHYYRKLGYELEGPYMVKYLAK 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01959 562 PIRSF HAT_Elp3 18 561 IPR034687 -
Vimu10g01959 562 MobiDBLite consensus disorder prediction 1 20 - -
Vimu10g01959 562 Pfam Radical SAM superfamily 121 309 IPR007197 GO:0003824|GO:0051536
Vimu10g01959 562 Pfam Acetyltransferase (GNAT) family 413 549 IPR000182 GO:0016747
Vimu10g01959 562 CDD Radical_SAM 110 357 - -
Vimu10g01959 562 NCBIfam tRNA uridine(34) 5-carboxymethylaminomethyl modification radical SAM/GNAT enzyme Elp3 48 560 IPR034687 -
Vimu10g01959 562 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 369 556 IPR016181 -
Vimu10g01959 562 Pfam Radical_SAM C-terminal domain 327 406 IPR032432 -
Vimu10g01959 562 ProSiteProfiles Radical SAM core domain profile. 96 386 IPR007197 GO:0003824|GO:0051536
Vimu10g01959 562 SFLD elongater protein-like 51 560 - -
Vimu10g01959 562 SFLD ELP3-like 51 560 IPR034687 -
Vimu10g01959 562 FunFam Elongator complex protein 3 409 561 - -
Vimu10g01959 562 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 410 562 IPR000182 GO:0016747
Vimu10g01959 562 PANTHER HISTONE ACETYLTRANSFERASE-RELATED 17 560 IPR039661 -
Vimu10g01959 562 SMART MiaB 103 365 IPR006638 GO:0003824|GO:0051536
Vimu10g01959 562 Gene3D - 412 561 - -
Vimu10g01959 562 SUPERFAMILY Radical SAM enzymes 133 372 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01959 Vimu-Chr10 28443166 28450334 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR GNAT Vimu10g01959 Radical_SAM 4.3e-18 CL0036
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01959 K07739 - gmx:100818764 1117.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g01959 10 28443166 28450334 Vimu10g01959 10 28443166 28450334 ECH