Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01952 ATGGCGGCGCCTGCGAACACTTTGGAGCTTTCCATCGTGGCGAATCCAAGAGAGAAAAACGAGGTTGACAAGGACGAAGGAGGGATGATGAACACGCATGCATTGTCGAGGCTGTTTCCGGGTATGAATAGGGAGAGAGAGATGTCTGCTATGGTCTCAGCTTTGACCCACGTTGTCACCGGAGAGTTTCCAACATCCACTGATAATCATGCTGTTACACCACACGTGCCTTCTTCTGCTTCTACAACACCCTCTTTACCTTCTTCATCTTCTCACAAGAGAGCAAGGGAACAAGACGCACCCTGCTTCTCGCAAACCTCTTCTATGCCAAGAACTAACGAGATACATGATACAGGTGGAGAATGTTCAAACAATTCGAGAAGCAGAATAACAAGGGAAATGGGAAATGCTGTGTACGAATACAAGACGACGGAGAATGTTAGAGGGGATGAGGAGAGGAGGAAATACAGAGGAGTGAGGCAGAGGCCGTGGGGGAAATGGGCGGCTGAGATAAGAGATCCGTTCAAGGCGGCGAGGGTGTGGTTGGGGACGTTTGACACCGCGGAGGCAGCTGCCAGAGCATACGATGAAGCTGCTCTTCGATTTAGAGGAAACAAAGCGAAACTAAACTTCCCTGAGAATGTCACTCTCCGACAACCTCAGTTTAGTGTTTCGACGGATCCAGTTGTGCATACTCCATCTTTTCTCCCTTCTCAAGGTCCCACCAACGTTTACGACTATTTTCAGCTCTATGATGATAGGACGCTAGTCACGTCTTCCATGGCTTCTCATCTTCACTCTTCTTCTTCTTCTGCCTTTGTAACTTCTTCGCAGGACACTTCACTTTCTTCCTTTTATTCTACCCAGATACCACCTTGGTCAGCTTCTGCTCCTAGCTCTTCTTCCTCCGGATGA 915 0.4863 MAAPANTLELSIVANPREKNEVDKDEGGMMNTHALSRLFPGMNREREMSAMVSALTHVVTGEFPTSTDNHAVTPHVPSSASTTPSLPSSSSHKRAREQDAPCFSQTSSMPRTNEIHDTGGECSNNSRSRITREMGNAVYEYKTTENVRGDEERRKYRGVRQRPWGKWAAEIRDPFKAARVWLGTFDTAEAAARAYDEAALRFRGNKAKLNFPENVTLRQPQFSVSTDPVVHTPSFLPSQGPTNVYDYFQLYDDRTLVTSSMASHLHSSSSSAFVTSSQDTSLSSFYSTQIPPWSASAPSSSSSG 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01952 304 Pfam AP2 domain 155 204 IPR001471 GO:0003700|GO:0006355
Vimu10g01952 304 Gene3D AP2/ERF domain 154 214 IPR036955 GO:0003700|GO:0006355
Vimu10g01952 304 MobiDBLite consensus disorder prediction 100 128 - -
Vimu10g01952 304 CDD AP2 155 214 IPR001471 GO:0003700|GO:0006355
Vimu10g01952 304 MobiDBLite consensus disorder prediction 64 91 - -
Vimu10g01952 304 FunFam Ethylene-responsive transcription factor 2 154 213 - -
Vimu10g01952 304 PANTHER DNA-BINDING DOMAIN 100 270 IPR044808 GO:0003700|GO:0009873
Vimu10g01952 304 SUPERFAMILY DNA-binding domain 155 213 IPR016177 GO:0003677
Vimu10g01952 304 ProSiteProfiles AP2/ERF domain profile. 155 212 IPR001471 GO:0003700|GO:0006355
Vimu10g01952 304 PRINTS Ethylene responsive element binding protein signature 156 167 IPR001471 GO:0003700|GO:0006355
Vimu10g01952 304 PRINTS Ethylene responsive element binding protein signature 178 194 IPR001471 GO:0003700|GO:0006355
Vimu10g01952 304 MobiDBLite consensus disorder prediction 64 128 - -
Vimu10g01952 304 SMART rav1_2 155 218 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01952 Vimu-Chr10 28378098 28379290 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01952 38 239 AP2-EREBP Transcription Factor Family AT5G64750 48.095 9.50e-39 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vimu10g01952 AP2 3.4e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01952 - - pvu:PHAVU_009G137900g 371.703