LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu10g01944	ATGGGATGCGTTTGTGGCAGGTTTTCTCCCCCTTCCGAGGCTCACCGCCGGAATCACCAAGTTAAGAGAGTTTTGAGCCGCAAGGGTTCCAGGCCACGCTCCTCTAATGTGGGAGAGAGGGTGAAAAGGGATACTCAGAGACAGAGAGTGCGCGTGAGTGTGAATAAGGATTCAGCTGGAGATGCTGTAATACGAGGAGGAGAAAAGGAAAAACCAGTTCCTAAAGAAGATGCTGCTAAACAAAGTAAGAGTAGTAAAGATTTGGATTCCAATGAGTCCAAGAACGAATTTGTGGATGGCTGGCCAAAGTGGTTACTGGATAACATCCCCACCAATGTTCTTGCTAAGCTTGTTCCCAAGAGTGCTGATTCCTATGAAAAACTTGCCAAGATAGGACGTGGAACGTATAGCAATGTGTACAAAGCAAGAGAGAAGGGCACTGGAAAGATTGTTGCTTTGAAGAAGGTACGGTTTGACACATCGGATTCTGAAAGCATAAAGTTTATGGCAAGAGAGATCATGATGCTGCAGATGCTTGATCATCCCAATGTCATCAAGCTTAAAGGACTAGCTACATCCAGAATGCAGTATAGTCTTTATCTGGTTTTTGACTTCATGCAGTCTGATCTCACTCGAATTATCTCTCGACCCGGGGAGACACTCACCGAACCGCAGATCAAGTGCTATATGCAGCAGCTACTTAGGGGTCTCCAGCACTGTCACGAGAGGGGAATTATGCACCGAGATATTAAGGCTTCAAACTTGTTAATAGACAGAAAAGGGGTTCTGAAAATTGCGGATTTTGGGCTTGCAACTTCCATTGAATCTGGAAAACCTCTAACAAATAGAGTGGTAACACTTTGGTATAGAGCTCCAGAACTTCTTTTGGGTTCAACCGATTATGGATATAGCATTGATCTCTGGAGTGCAGGGTGCCTCTTGGCTGAGATGTTTGTTGGAAGACCAATTATGCCTGGCAGGACAGAGGTTGAACAGATTCAGATGATCTTCAAACTTTGTGGTTCTCCTTCAGAGGATTACTTCAAAAAACTGAAGCTAACAACAAGCTTCCGGCCTCCACAGCATTACAAACCTACCTACCAAGACAATTTCAACAACTTTCCTTCCTCTTTCCATTCCCTCTTGGCCACACTTCTTCATCTCAACCCCACAAATCGTGGAACTGCTGCCTCTGCCCTTCAAACTGAATTCTTCCGATGTAGTCCATTAGCATGTGACCCTTCAGCTTTACCAGTAATCATCAAAGACGAGGATGAACGCTTACAAACTAAGAGAAGCAAAAGGCACAGGGTTTCTAAAAAAGGCCAACCATCTCAAACAAGTAAAAGTGAAGCTGAATCACGAAAAACCCAAATTCCAGAACAACCTCGTCAAGATACACAATCAACAAAAGAGAAGAATGTGGAACAGCAGAAGCAGAGTCAAGAAACTGGGAGTGGTAGCAGCACATCATCTGGGTCAAGACTATTCACGAATGAAGGGAGCACAAACACATCTTTATCACCAACTTTTCTCTCTAGTGGCAGTGTGAGAAAATCTCCCAAAACAGAAGGTAGTCCAAATGCTCTTAAGAACATAAACCACTATAATGCACTCTTACAGGCTTCTATGATTGGTATCATCAACCGAAATGAAGGCAGCGAACTTCCTCAGCTTCCAAAATCCTTCTCTCACTTGGATTATCGACTTGGTCCAGACAAGCTATCAAACCTCTATACTTTATCTAATAAATATGTTTAA	1761	0.4344	MGCVCGRFSPPSEAHRRNHQVKRVLSRKGSRPRSSNVGERVKRDTQRQRVRVSVNKDSAGDAVIRGGEKEKPVPKEDAAKQSKSSKDLDSNESKNEFVDGWPKWLLDNIPTNVLAKLVPKSADSYEKLAKIGRGTYSNVYKAREKGTGKIVALKKVRFDTSDSESIKFMAREIMMLQMLDHPNVIKLKGLATSRMQYSLYLVFDFMQSDLTRIISRPGETLTEPQIKCYMQQLLRGLQHCHERGIMHRDIKASNLLIDRKGVLKIADFGLATSIESGKPLTNRVVTLWYRAPELLLGSTDYGYSIDLWSAGCLLAEMFVGRPIMPGRTEVEQIQMIFKLCGSPSEDYFKKLKLTTSFRPPQHYKPTYQDNFNNFPSSFHSLLATLLHLNPTNRGTAASALQTEFFRCSPLACDPSALPVIIKDEDERLQTKRSKRHRVSKKGQPSQTSKSEAESRKTQIPEQPRQDTQSTKEKNVEQQKQSQETGSGSSTSSGSRLFTNEGSTNTSLSPTFLSSGSVRKSPKTEGSPNALKNINHYNALLQASMIGIINRNEGSELPQLPKSFSHLDYRLGPDKLSNLYTLSNKYV	586

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu10g01944	586	Gene3D	Transferase(Phosphotransferase) domain 1	208	486	-	-
	Vimu10g01944	586	MobiDBLite	consensus disorder prediction	427	529	-	-
	Vimu10g01944	586	PANTHER	CELL DIVISION PROTEIN KINASE	123	411	-	-
	Vimu10g01944	586	ProSiteProfiles	Protein kinase domain profile.	125	405	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vimu10g01944	586	SUPERFAMILY	Protein kinase-like (PK-like)	120	408	IPR011009	-
	Vimu10g01944	586	ProSitePatterns	Protein kinases ATP-binding region signature.	131	154	IPR017441	GO:0005524
	Vimu10g01944	586	FunFam	probable serine/threonine-protein kinase At1g54610	112	207	-	-
	Vimu10g01944	586	FunFam	Putative serine/threonine-protein kinase	208	443	-	-
	Vimu10g01944	586	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	245	257	IPR008271	GO:0004672\|GO:0006468
	Vimu10g01944	586	CDD	STKc_CDK9_like	125	405	-	-
	Vimu10g01944	586	MobiDBLite	consensus disorder prediction	33	51	-	-
	Vimu10g01944	586	MobiDBLite	consensus disorder prediction	479	529	-	-
	Vimu10g01944	586	Pfam	Protein kinase domain	125	405	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vimu10g01944	586	MobiDBLite	consensus disorder prediction	454	478	-	-
	Vimu10g01944	586	MobiDBLite	consensus disorder prediction	62	95	-	-
	Vimu10g01944	586	SMART	serkin_6	125	405	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vimu10g01944	586	MobiDBLite	consensus disorder prediction	1	95	-	-
	Vimu10g01944	586	Gene3D	Phosphorylase Kinase; domain 1	113	207	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu10g01944	Vimu-Chr10	28219795	28224519	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vimu10g01944	120	537	Core Cell Cycle Gene Families	AT5G10270	39.863	1.24e-93	295

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-CRK7-CDK9	Vimu10g01944		Pkinase	2.2e-72	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu10g01944	K08819		-	gmx:100782603	842.032