Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01936 ATGATGTCAACAACGTCTCAAACTAGTGTTAACCATAGCTTGTTTGAAGAGCAAGATCAGATCCCAACGCAGATGGAGTTCAATATTCCTTTTCCATCAACCCAGGCCTTCCCTCCTTTGGGTTGCCATCAATCTTTGAAATCCATCAGTGCACTGCTTCCTTCTCTTTCATCTGAACCTGCTTCTTCTTCTGCGAATTTTGCAGAAACCCTATTTTCAACTTCTGTTCAAAGACAACGAGAAGATCTCACTTCAACTTTGATAGGAGGAGGAGGAGGAGGAGGAGGACAACTCCTTTCCTTGAACAGATCGAGACTGAATCCATGGGCATGGGAAGAAGTAACCGATTGCTTGATGAGTAAAAGAATGGGAGGAGGTGATAACCATCATCTAGGGGTTTCCGCCATGAAGATGAAGAAAATTAAGGCAAGGAGAAAGGTGCGGGAGCCAAGGTTTTGCTTCAAGACTATGAGCGATGTTGATGTGTTGGATGATGGCTACAAGTGGAGGAAGTACGGACAGAAAGTGGTAAAGAATACACAACACCCAAGAAGCTACTACCGTTGCACCCAAGATAACTGTCGAGTGAAGAAACGCGTGGAGCGGTTGGCGGAGGATCCAAGGATGGTGATAACCACATATGAGGGGAGACATGTGCACTCGCCATCAAATGAACTCGAAGACTCACAATCTCCTTCTGAACTTAGTAGCTTCTTGTGGTAG 723 0.4537 MMSTTSQTSVNHSLFEEQDQIPTQMEFNIPFPSTQAFPPLGCHQSLKSISALLPSLSSEPASSSANFAETLFSTSVQRQREDLTSTLIGGGGGGGGQLLSLNRSRLNPWAWEEVTDCLMSKRMGGGDNHHLGVSAMKMKKIKARRKVREPRFCFKTMSDVDVLDDGYKWRKYGQKVVKNTQHPRSYYRCTQDNCRVKKRVERLAEDPRMVITTYEGRHVHSPSNELEDSQSPSELSSFLW 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01936 240 FunFam WRKY transcription factor 57 149 223 - -
Vimu10g01936 240 Pfam WRKY DNA -binding domain 164 220 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu10g01936 240 SUPERFAMILY WRKY DNA-binding domain 155 222 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu10g01936 240 MobiDBLite consensus disorder prediction 225 240 - -
Vimu10g01936 240 Gene3D WRKY domain 150 216 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu10g01936 240 ProSiteProfiles WRKY domain profile. 158 223 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu10g01936 240 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 36 225 IPR044810 GO:0003700
Vimu10g01936 240 SMART WRKY_cls 163 222 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu10g01936 240 MobiDBLite consensus disorder prediction 215 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01936 Vimu-Chr10 27923309 27926342 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01936 43 240 WRKY Transcription Factor Family AT4G39410 50.202 1.22e-62 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vimu10g01936 WRKY 1e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01936 - - gmx:100127389 372.474
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g01936 10 27923309 27926342 Vimu10g01936 10 27923309 27926342 ECH