Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01933 ATGGAACACTATTTTGAAAACCCTAATTTCTGTCACTCTGCCGTGGTCAACATGGCAGCATCTCCAGCCTCCGAGTTTAAGATATCTGATTATCTCATATTGGAAGATGTTGTTGATTATCATCATGAAGAGTGTTGGTCACTAAGCACTGAAACTGAATCATCGGAGAAAGCAAACTCTAGCGATGCCAGTCATGGATTTGGTGATGCAACCTCCTCCATCACCACCACCACCAACAACAACATAAAGTGCAAAAATAAAGGGATTAAGCAAAAGAAGGCAGAAGTGAGTCAAAGCATCACGTTTAGAACCAGATCGCAGCTCGAGATCATGGATGATGGATATAAATGGAGGAAATACGGAAAGAAGACAGTGAAGAACAATTCCAACCCAAGGAACTACTACAAGTGTTCAGGTGCAGGATGCAGTGTGAAGAAAAGGGTGGAAAGAGACCGAAATGACTCCAACTATGTTCTAACAACGTACGTAGGTGTCCACAATCACCACACCCCCTCTTCCTATTACACCCAAATGCCTTTGTTGCATTCTGATGATTGGAACCTTCACCCTTCTGCAACTCAAAACTCATAG 591 0.4281 MEHYFENPNFCHSAVVNMAASPASEFKISDYLILEDVVDYHHEECWSLSTETESSEKANSSDASHGFGDATSSITTTTNNNIKCKNKGIKQKKAEVSQSITFRTRSQLEIMDDGYKWRKYGKKTVKNNSNPRNYYKCSGAGCSVKKRVERDRNDSNYVLTTYVGVHNHHTPSSYYTQMPLLHSDDWNLHPSATQNS 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01933 196 SMART WRKY_cls 111 170 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu10g01933 196 MobiDBLite consensus disorder prediction 51 72 - -
Vimu10g01933 196 SUPERFAMILY WRKY DNA-binding domain 103 171 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu10g01933 196 FunFam WRKY transcription factor 57 97 171 - -
Vimu10g01933 196 Pfam WRKY DNA -binding domain 112 168 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu10g01933 196 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 41 174 IPR044810 GO:0003700
Vimu10g01933 196 ProSiteProfiles WRKY domain profile. 106 171 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu10g01933 196 Gene3D WRKY domain 95 172 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01933 Vimu-Chr10 27837281 27839497 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01933 68 189 WRKY Transcription Factor Family AT5G64810 53.968 3.46e-41 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vimu10g01933 WRKY 8.9e-22 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01933 - - gmx:100127396 278.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g01933 10 27837281 27839497 Vimu10g01933 10 27837281 27839497 ECH
Vimu1g02588 1 37408585 37410792 Vimu10g01933 10 27837281 27839497 PCT