Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01903 ATGTTTCGTCTGTTCCATTACGAAGGAGGTGCACGATTCCCAATCGGCGTCTCGCGAAATCGAAGCCCTGAGGATCCTGAAAGGGTCCCAAAACGTGGTCGTTCTGCACGAGTTCTTCTGGCGCGAGGACGAGGACGCGGTTCTCGTGCTCGAGTTTCTCGGAACCGACCTTGCCGCCGTGATCGGAAAAGGTGGTGTCGGAGTCGAGACTTAAAACCCGCGAATTTTTTAGTTTTCGATGATGGGGTGCTCAAGTTAGCAGATTTTGGGCAGGCAAGGATACTAGTGGAGTGTGGATTCGATGGTCACCAGGAAGATGATGATGCTTCAAATAGTGAAAGATCACTCCAACAACATTCTGAAGCTATTTCCCAACTAGACAACTTATATCAAACTGAACATGAAAACCCAGATCAGAGAACCTTGAGCCATGAAGAATATTTCAGAGTTTTAGATGAGATGAAAACTAAGAGCTACCCTTATGACACTGACAAGGAAGCAAATATCCATGATGGAAACACCTCATGTCTTGCAACATGCACAACGAGTGACATAGATGATGAACTTTGCAAAGGTTCTTTTACCTATGAAGCTGAGGAGGTGGGAGGGAATGAACTTGGCTGTCTGACATCATGTGTTGGAACACGCTGGTTTCGGGCTCCTGAGTTACTGTATGGATCCACAGACTATGGTTTAGAGATTGATCTTTGGTCATTGGGGTGTGTTTTTGCTGAGCTCTTAACATCGAAGCCATTGTTTCCTGGAACAAGTGATGTAGACCAGCTTAACAGAATTGTGAGTGTCTTGGGGAACATTAACGAGGAAACTTGGCCTGGTTGTTCCAAACTTCCTGATTATGGAAAAATCTCATTTTTCAAGGTGGAAAACCCAAGTGGTCTTGAAGCATGCTTACCCAATTGCACCCCTGATGAAGTTTCCCTAGTCAAAAGACTGGTTTGTTATGATCCAGATAAGAGAGCCACAGCAATGGAGTTGCTTCAGGACAATATTGGACAAGACAAGGATCTCCCTGGAGGGCACAATCAAAAGGGCTCTGATTCTGATTTGGAGGAGTTTAGAACTTTGAATATCACCACAACTGATTCTGATTTTTCTATTCAGATCCCCTGA 1131 0.4483 MFRLFHYEGGARFPIGVSRNRSPEDPERVPKRGRSARVLLARGRGRGSRARVSRNRPCRRDRKRWCRSRDLKPANFLVFDDGVLKLADFGQARILVECGFDGHQEDDDASNSERSLQQHSEAISQLDNLYQTEHENPDQRTLSHEEYFRVLDEMKTKSYPYDTDKEANIHDGNTSCLATCTTSDIDDELCKGSFTYEAEEVGGNELGCLTSCVGTRWFRAPELLYGSTDYGLEIDLWSLGCVFAELLTSKPLFPGTSDVDQLNRIVSVLGNINEETWPGCSKLPDYGKISFFKVENPSGLEACLPNCTPDEVSLVKRLVCYDPDKRATAMELLQDNIGQDKDLPGGHNQKGSDSDLEEFRTLNITTTDSDFSIQIP 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01903 376 PANTHER CELL DIVISION PROTEIN KINASE 63 339 - -
Vimu10g01903 376 SMART serkin_6 24 338 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g01903 376 SUPERFAMILY Protein kinase-like (PK-like) 69 337 IPR011009 -
Vimu10g01903 376 ProSiteProfiles Protein kinase domain profile. 1 343 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g01903 376 Gene3D Transferase(Phosphotransferase) domain 1 63 354 - -
Vimu10g01903 376 MobiDBLite consensus disorder prediction 337 358 - -
Vimu10g01903 376 Pfam Protein kinase domain 209 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01903 Vimu-Chr10 27358415 27360159 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01903 69 376 Core Cell Cycle Gene Families AT4G28980 50.448 5.41e-109 326
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CCRK Vimu10g01903 Pkinase 4.2e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01903 - - gmx:548056 525.398