Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vimu10g01895 | ATGAATTCCCCACCCAACCTCTTCATCTCGTTTCTTCTTCTTCTTCTTCTCTTCTTCACTGTCTTCTCCACTTCTTCCTCCGCCTCACTCCCGGAGCTTCGATCTCTCATGGAATTCAAGAAGGGGATAACTAAAGATCCCCACAACCTACTCGACTCCTGGGCTCCGGCCGCGGTCGCCGAGTCCACCGCTGCCTGTCCTTCTACTTGGCAGGGCGTTCTTTGTGACGAGGAGTCCGGCAACGTCACCGGAATCGTCCTCGACCGCCTCCACCTCGGCGGGGAGCTCAAGTTCCACACTCTCCTCGACCTCAAGATGCTCAGAAACCTCTCCCTCTCCGGCAACGATTTCACTGGAAGGTTGCCTCCTTCCCTAGGCTCGCTCTCCTCTCTCCAGCATTTGGATCTTTCGCAGAACAAGTTCTACGGTCCCATCCCAGCTCGGATCAACGACCTTTGGGGTCTTAATTACCTCAATTTGTCCAACAACCAGTTCAAGGGTGGCTTCCCCAGTGGCCTTTCCAACCTTCAGCAGCTCCGAGTCCTCGATTTGCATTCCAATGCTCTCTGGGCGGAAATTGGGGACGTCCTCTCTACGCTACGGAATGTGGAACGCGTCGATTTGAGTCTTAACCAGTTCTTTGGTGGACTTTCCCTCACTGTGGAGAATATTTCTGGATTGGCCAACACGGTACATTTTCTTAACCTCAGTTACAACAACTTGAACGGTCACTTCTTTAAGAACTCCACCATTGGCCTGTTTCGCAACCTGCAAGTTTTGGACTTGAGTAATAATTCCATCACCGGGGAGCTTCCTTCTTTTGGCTCATTACCCGCACTTCGCGTTCTTAGGCTTCCCCGGAACCAACTGTTTGGCTCCGTGCCCGAGGAGTTGTTGCAAACTTCAGTGCCACTGGTAGAATTGGATCTTAGCGTCAACGGGTTTACCGGCTCAATAGCTGCAATAAACTCTACAAGTTTAAGTATTTTGAATCTTTCATCCAATAGTTTGTCAGGATCGTTGCCGACTTCTTTGACAAGATGTACGGTCATTGACATTAGCAGAAATATGTTATCTGGTGACATTTCTGTTATACAGAACTGGGAAGCCCCACTGGAGGTTATTAATCTGAGTTCAAACAAGCTGTCAGGATCCTTGCCCCCTACTTTAGGAACCTATTCAAAATTGTTTACAGTTGATTTAAGTTTAAATGAGCTCAAGGGATCCATTCCACGAGGTTTAGTTACTTCATCATCAGTGACAAGACTGAACCTTTCTGGAAATCAGCTCACAGGGCAACTTCTGCTTCAAGGTTCAGGAGCCAGTGAGTTACTCCTTATGCCTCCTTATCAACCAATGGAATATCTTGATGTATCTAATAACTCCTTAGAAGGTGCCTTGCCTTCTGAAATAGATAGGATGAGTGTCCTCAAACTGCTGAATGTGGCTAGGAATGAGTTTTCTGGACCGCTGCCAAGTGAATTGAACAAACTTCTTTATTTGGAGTACCTTGATTTGTCTAACAACAAATTTTCTGGAAATATTCCTGATAAGCTTTCATCCAACTTAATTGTATTTAACGTGTCCAATAATGATCTATCTGGTCGAGTTCCAGAAAATTTGCGACAGTTCTCTCCTTCGTCCTTTCGCCCTGGAAATGGAAAGTTAATGTTACCAAATGATTCTCCTGAGACTTCTTCGGTGCCTGATAACATTCCAGATAAGGGTAGACGTCATAGTTCAAAGGGTAATATCAGGATAGCAATTATTCTTGCCTCTGTAGGTGCTGCTATTATGATTGCTTTTGTTTTATTGGCATATCATCGAACACAACTAAAAGAATTTCATGGAAGAAGTGAGTTCACTGGTCAAAATACTAGAAGAGATGTCAAGTTAGGAGGACTTTCGAGGCCTTCCCTCTTCAAGTTCAATACAAATGTTCAACCCCCAACAACCTCATTGAGCTTTTCGAATGACCACCTCCTGACTTCCAATTCGAGGTCACTCTCTGGTGGACAGTCAGAGTTTATAACTGAAATTTCTGAGCATGGCTTAACGCAGGGAATGGTGGCTACTAGTTCAGCATCTGTAAATCCTAATTTGATGGATAACCCTCCCACTTCATCTGGAAGGAAGTCTTCTCCTGGTTCTCCATTGTCATCCTCACCACGTTTCATAGAGGCTTGTGAAAAGCCAGTGATGTTGGATGTTTACTCACCAGATCGGTTGGCTGGGGAATTGTTTTTCCTGGACTCTTCCCTGGCATTCACTGCAGAGGAATTATCTAGAGCACCAGCTGAAGTTCTTGGCAGAAGTAGCCATGGCACTTTATATAAAGCAACTTTGGACAGTGGTCATATGTTGACTGTAAAATGGTTACGGGTGGGGTTGGTGAAACATAAAAAGGAATTTGCTAGAGAAGTTAAAAGGATTGGTTCTATGAGGCATCCAAACATTGTCCCATTACGAGCATACTATTGGGGGCCTAGGGAACAAGAAAGGCTCCTTTTAGCTGACTATATACATGGGGACAATTTGGCCCTTCATCTCTATGAGAGCACACCAAGAAGGTACTCCCCGTTATCATTCAGCCAGAGAATAAAAGTTGCTGTTGATGTTGCACGATGTCTTCTATACCTTCATGACCGAGGACTTCCCCATGGAAATCTGAAGCCCACGAATATAGTTTTGGCAAGCCCTGATTTCAGTGCTCGTCTTACTGACTATGGTCTGCACCGGCTGATGACTCCGGCTGGAATTGCAGAGCAGATACTGAACCTTGGAGCACTTGGATACCGTGCTCCGGAACTTGCTGCTGCATCAAAACCCGTTCCTTCGTTTAAGGCCGATGTGTATGCTCTTGGTGTGATCCTAATGGAATTGTTGACAAGAAAAAGTGCAGGTGACATAATATCGGGGCAGTCAGGTGCTGTTGATCTTACAGATTGGGTTAGGCTGTGTGAGAGAGAAGGAAGGGTAATGGACTGTATCGACAGAGACATTGCAGGTGGGGAAGAATCCTTCAAAGAGATGGATGAACTGCTTGCAATATCTCTCAGGTGTATTCTCCCTGTAAATGAGAGGCCTAACATCAGACAAGTTTTTGACGATCTGTGTTCAATATCCGTTTGA | 3132 | 0.4547 | MNSPPNLFISFLLLLLLFFTVFSTSSSASLPELRSLMEFKKGITKDPHNLLDSWAPAAVAESTAACPSTWQGVLCDEESGNVTGIVLDRLHLGGELKFHTLLDLKMLRNLSLSGNDFTGRLPPSLGSLSSLQHLDLSQNKFYGPIPARINDLWGLNYLNLSNNQFKGGFPSGLSNLQQLRVLDLHSNALWAEIGDVLSTLRNVERVDLSLNQFFGGLSLTVENISGLANTVHFLNLSYNNLNGHFFKNSTIGLFRNLQVLDLSNNSITGELPSFGSLPALRVLRLPRNQLFGSVPEELLQTSVPLVELDLSVNGFTGSIAAINSTSLSILNLSSNSLSGSLPTSLTRCTVIDISRNMLSGDISVIQNWEAPLEVINLSSNKLSGSLPPTLGTYSKLFTVDLSLNELKGSIPRGLVTSSSVTRLNLSGNQLTGQLLLQGSGASELLLMPPYQPMEYLDVSNNSLEGALPSEIDRMSVLKLLNVARNEFSGPLPSELNKLLYLEYLDLSNNKFSGNIPDKLSSNLIVFNVSNNDLSGRVPENLRQFSPSSFRPGNGKLMLPNDSPETSSVPDNIPDKGRRHSSKGNIRIAIILASVGAAIMIAFVLLAYHRTQLKEFHGRSEFTGQNTRRDVKLGGLSRPSLFKFNTNVQPPTTSLSFSNDHLLTSNSRSLSGGQSEFITEISEHGLTQGMVATSSASVNPNLMDNPPTSSGRKSSPGSPLSSSPRFIEACEKPVMLDVYSPDRLAGELFFLDSSLAFTAEELSRAPAEVLGRSSHGTLYKATLDSGHMLTVKWLRVGLVKHKKEFAREVKRIGSMRHPNIVPLRAYYWGPREQERLLLADYIHGDNLALHLYESTPRRYSPLSFSQRIKVAVDVARCLLYLHDRGLPHGNLKPTNIVLASPDFSARLTDYGLHRLMTPAGIAEQILNLGALGYRAPELAAASKPVPSFKADVYALGVILMELLTRKSAGDIISGQSGAVDLTDWVRLCEREGRVMDCIDRDIAGGEESFKEMDELLAISLRCILPVNERPNIRQVFDDLCSISV | 1043 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vimu10g01895 | 1043 | Pfam | Leucine rich repeat N-terminal domain | 32 | 76 | IPR013210 | - | |
Vimu10g01895 | 1043 | SUPERFAMILY | Protein kinase-like (PK-like) | 766 | 1038 | IPR011009 | - | |
Vimu10g01895 | 1043 | Gene3D | Ribonuclease Inhibitor | 302 | 566 | IPR032675 | - | |
Vimu10g01895 | 1043 | FunFam | Leucine-rich repeat receptor protein kinase EMS1 | 446 | 540 | - | - | |
Vimu10g01895 | 1043 | FunFam | LRR receptor-like serine/threonine-protein kinase GSO1 | 229 | 444 | - | - | |
Vimu10g01895 | 1043 | SUPERFAMILY | L domain-like | 66 | 363 | - | - | |
Vimu10g01895 | 1043 | FunFam | Nuclear pore complex protein NUP107 | 29 | 195 | - | - | |
Vimu10g01895 | 1043 | MobiDBLite | consensus disorder prediction | 544 | 579 | - | - | |
Vimu10g01895 | 1043 | SMART | LRR_typ_2 | 498 | 522 | IPR003591 | - | |
Vimu10g01895 | 1043 | SMART | LRR_typ_2 | 176 | 200 | IPR003591 | - | |
Vimu10g01895 | 1043 | SMART | LRR_typ_2 | 277 | 301 | IPR003591 | - | |
Vimu10g01895 | 1043 | SMART | LRR_typ_2 | 254 | 276 | IPR003591 | - | |
Vimu10g01895 | 1043 | SMART | LRR_typ_2 | 128 | 152 | IPR003591 | - | |
Vimu10g01895 | 1043 | SMART | LRR_typ_2 | 325 | 348 | IPR003591 | - | |
Vimu10g01895 | 1043 | PANTHER | OS07G0626500 PROTEIN | 14 | 107 | - | - | |
Vimu10g01895 | 1043 | Gene3D | Ribonuclease Inhibitor | 32 | 193 | IPR032675 | - | |
Vimu10g01895 | 1043 | MobiDBLite | consensus disorder prediction | 695 | 723 | - | - | |
Vimu10g01895 | 1043 | FunFam | Pollen receptor-like kinase 1 | 841 | 1043 | - | - | |
Vimu10g01895 | 1043 | Pfam | Leucine Rich repeats (2 copies) | 256 | 288 | IPR025875 | - | |
Vimu10g01895 | 1043 | Pfam | Protein kinase domain | 767 | 969 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vimu10g01895 | 1043 | Gene3D | Phosphorylase Kinase; domain 1 | 744 | 840 | - | - | |
Vimu10g01895 | 1043 | SUPERFAMILY | RNI-like | 323 | 543 | - | - | |
Vimu10g01895 | 1043 | ProSiteProfiles | Protein kinase domain profile. | 763 | 1043 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vimu10g01895 | 1043 | Gene3D | Transferase(Phosphotransferase) domain 1 | 842 | 1043 | - | - | |
Vimu10g01895 | 1043 | ProSiteProfiles | Leucine-rich repeat profile. | 256 | 278 | IPR001611 | GO:0005515 | |
Vimu10g01895 | 1043 | MobiDBLite | consensus disorder prediction | 695 | 721 | - | - | |
Vimu10g01895 | 1043 | Gene3D | Ribonuclease Inhibitor | 194 | 301 | IPR032675 | - | |
Vimu10g01895 | 1043 | FunFam | Leucine-rich repeat receptor-like protein kinase | 748 | 840 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vimu10g01895 | Vimu-Chr10 | 27275362 | 27280284 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vimu10g01895 | 12 | 620 | Receptor kinase-like Gene Family | AT5G62230 | 33.549 | 4.23e-61 | 224 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
PK | RLK-Pelle_LRR-III | Vimu10g01895 | Pkinase | 4e-27 | CL0016 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vimu10g01895 | - | - | gmx:100802768 | 1785 |