Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01894 ATGTCCAGAGAAAGGGGGAGATTTGATGAGATAGGGAAGAAGATCAAAAGGGAAGGAGATGTTTCTTCTCAAATGGGAAGAAGACACATGTTAGGCCCTCCTGGAACCCTAAATACCATCACCCCTTGTGCAGCATGTAAGTTGTTGAGAAGAAGATGTGCCCAAGAATGTCCCTTTTCACCATATTTCTCTCCCCATGAGCCTCAAAAGTTTGCTTCAGTCCACAAAGTTTTTGGTGCCAGTAACGTCTCAAAGATGCTCATGGAAGTACCAGAGTGTCAGAGAGCTGATGCAGCAAATAGTCTAGTTTATGAAGCTAATGTGAGGCTAAGAGACCCTGTGTATGGATGCATGGGTGCAATTTCTGGTTTGCAGCAACAAGTTCAATCTTTACAAGCTGAACTTAATGTAGTGAGGGCTGAAATACTTAAATACAAACTCAGGGAAGCTCACATGATACCCTCCTCTCATGTTGCAATGCTTCCTTCATCTGGGGCTGTTTCAATCGCTGCTCCACCTCCACCACCTCCTCCACCACCACCACTTCCACCTCCTTCTATTCCTCAAACTTCTTCCTCTTCTTCCATCTACATCCAACACAGAGATCCCACCACTTACACCACAATTTCAACTGATAATATCTCCTATTTTGGTTAA 657 0.4414 MSRERGRFDEIGKKIKREGDVSSQMGRRHMLGPPGTLNTITPCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKMLMEVPECQRADAANSLVYEANVRLRDPVYGCMGAISGLQQQVQSLQAELNVVRAEILKYKLREAHMIPSSHVAMLPSSGAVSIAAPPPPPPPPPPLPPPSIPQTSSSSSIYIQHRDPTTYTTISTDNISYFG 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01894 218 ProSiteProfiles LOB domain profile. 41 142 IPR004883 -
Vimu10g01894 218 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 38 179 - -
Vimu10g01894 218 Pfam Lateral organ boundaries (LOB) domain 42 139 IPR004883 -
Vimu10g01894 218 MobiDBLite consensus disorder prediction 169 188 - -
Vimu10g01894 218 MobiDBLite consensus disorder prediction 169 204 - -
Vimu10g01894 218 Coils Coil 121 148 - -
Vimu10g01894 218 MobiDBLite consensus disorder prediction 189 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01894 Vimu-Chr10 27263569 27264739 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01894 27 169 AS2 family AT2G40470 83.673 1.92e-74 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vimu10g01894 LOB 3.8e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01894 - - ccaj:109797870 363.229