Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01887 ATGAATTATACTCTTATAACGGACTACTTGATTGTGGGCTCTCAACCGCAGAAACCGGAAGACATAGATCACTTAAAAAAGGAAGAGGGTGTGACATACATTCTAAATTTGCAACAGGACAAAGATGTTGATTACTGGGGAATAGATTTACAGTCAATAATAAGAAGGTGTCACGAACTTGAAATTGGCCACATTAGGAGACCGGCAAAAGACTTTGATCCAGGGTCCTTGCGAAGTGAACTACCTAAAGCAGTTGCATCCTTAGAATGGGCAATTTCTCAGGGGAAAGGAAGAGTTTATGTACACTGTACTGCAGGGCTTGGAAGAGCTCCAGCAGTGGCAATTGCTTATTTGTTCTGGTTTTGTCGCATGAAGCTAAATGAAGCGTATGATATGCTAACTTCAAAGAGACCTTGTGGACCAAATAAAACAGCCATACGTGGGGCTACGTATGATTTGTCTAAGAATGATCCATTCAAGGAGCCATTTGAGAATCTTCCAGAATATGCATTTGAGGATATAGCAGACTGGGAAAGAAACTTGATCCAAAATCGTGTTCGCTCCCTTCGAGATACTTGA 579 0.4128 MNYTLITDYLIVGSQPQKPEDIDHLKKEEGVTYILNLQQDKDVDYWGIDLQSIIRRCHELEIGHIRRPAKDFDPGSLRSELPKAVASLEWAISQGKGRVYVHCTAGLGRAPAVAIAYLFWFCRMKLNEAYDMLTSKRPCGPNKTAIRGATYDLSKNDPFKEPFENLPEYAFEDIADWERNLIQNRVRSLRDT 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01887 192 PANTHER DUAL SPECIFICITY PHOSPHATASE, SUBGROUP, CATALYTIC DOMAIN 1 158 - -
Vimu10g01887 192 CDD DSP_laforin-like 1 148 IPR045204 GO:0019203
Vimu10g01887 192 Gene3D Protein tyrosine phosphatase superfamily 1 192 IPR029021 -
Vimu10g01887 192 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 79 138 IPR000387 GO:0016311|GO:0016791
Vimu10g01887 192 ProSiteProfiles Dual specificity protein phosphatase domain profile. 2 159 IPR020422 GO:0006470|GO:0008138
Vimu10g01887 192 Pfam Dual specificity phosphatase, catalytic domain 23 142 IPR000340 GO:0008138|GO:0016311
Vimu10g01887 192 SMART dsp_5 2 144 IPR020422 GO:0006470|GO:0008138
Vimu10g01887 192 FunFam Phosphoglucan phosphatase LSF2, chloroplastic 1 192 - -
Vimu10g01887 192 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 2 144 IPR029021 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01887 Vimu-Chr10 27018037 27019293 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01887 1 192 Protein tyrosine phosphatase (PTP) family AT3G10940 80.208 7.70e-118 334
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01887 - - gmx:100787079 357.066