Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vimu10g01887 | ATGAATTATACTCTTATAACGGACTACTTGATTGTGGGCTCTCAACCGCAGAAACCGGAAGACATAGATCACTTAAAAAAGGAAGAGGGTGTGACATACATTCTAAATTTGCAACAGGACAAAGATGTTGATTACTGGGGAATAGATTTACAGTCAATAATAAGAAGGTGTCACGAACTTGAAATTGGCCACATTAGGAGACCGGCAAAAGACTTTGATCCAGGGTCCTTGCGAAGTGAACTACCTAAAGCAGTTGCATCCTTAGAATGGGCAATTTCTCAGGGGAAAGGAAGAGTTTATGTACACTGTACTGCAGGGCTTGGAAGAGCTCCAGCAGTGGCAATTGCTTATTTGTTCTGGTTTTGTCGCATGAAGCTAAATGAAGCGTATGATATGCTAACTTCAAAGAGACCTTGTGGACCAAATAAAACAGCCATACGTGGGGCTACGTATGATTTGTCTAAGAATGATCCATTCAAGGAGCCATTTGAGAATCTTCCAGAATATGCATTTGAGGATATAGCAGACTGGGAAAGAAACTTGATCCAAAATCGTGTTCGCTCCCTTCGAGATACTTGA | 579 | 0.4128 | MNYTLITDYLIVGSQPQKPEDIDHLKKEEGVTYILNLQQDKDVDYWGIDLQSIIRRCHELEIGHIRRPAKDFDPGSLRSELPKAVASLEWAISQGKGRVYVHCTAGLGRAPAVAIAYLFWFCRMKLNEAYDMLTSKRPCGPNKTAIRGATYDLSKNDPFKEPFENLPEYAFEDIADWERNLIQNRVRSLRDT | 192 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vimu10g01887 | 192 | PANTHER | DUAL SPECIFICITY PHOSPHATASE, SUBGROUP, CATALYTIC DOMAIN | 1 | 158 | - | - | |
Vimu10g01887 | 192 | CDD | DSP_laforin-like | 1 | 148 | IPR045204 | GO:0019203 | |
Vimu10g01887 | 192 | Gene3D | Protein tyrosine phosphatase superfamily | 1 | 192 | IPR029021 | - | |
Vimu10g01887 | 192 | ProSiteProfiles | Tyrosine specific protein phosphatases domain profile. | 79 | 138 | IPR000387 | GO:0016311|GO:0016791 | |
Vimu10g01887 | 192 | ProSiteProfiles | Dual specificity protein phosphatase domain profile. | 2 | 159 | IPR020422 | GO:0006470|GO:0008138 | |
Vimu10g01887 | 192 | Pfam | Dual specificity phosphatase, catalytic domain | 23 | 142 | IPR000340 | GO:0008138|GO:0016311 | |
Vimu10g01887 | 192 | SMART | dsp_5 | 2 | 144 | IPR020422 | GO:0006470|GO:0008138 | |
Vimu10g01887 | 192 | FunFam | Phosphoglucan phosphatase LSF2, chloroplastic | 1 | 192 | - | - | |
Vimu10g01887 | 192 | SUPERFAMILY | (Phosphotyrosine protein) phosphatases II | 2 | 144 | IPR029021 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vimu10g01887 | Vimu-Chr10 | 27018037 | 27019293 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vimu10g01887 | 1 | 192 | Protein tyrosine phosphatase (PTP) family | AT3G10940 | 80.208 | 7.70e-118 | 334 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vimu10g01887 | - | - | gmx:100787079 | 357.066 |