Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01875 ATGGTGAGGCGAAAGGGAGTGGAGACGGCTTGCCGAGAGTCGTTGAGGCGAGACGAACACGGCAATGCTGAAGCGAGAAGACCGGAGAGGCGAAAGGAGTGGAGAGTGCAGACGAAGGACCTGCGGCTTTATATCCCAATGCCGCTTTTGAGGAGAAAACCTTTTGCCCTGGCTGAACCACCGAATGATTTGGAGCCATGCGAGAGTCTTTTTCAAATTCGATTTACTAAAGAAGTATTTCGAGATTATAATGATTATTTGAACCGCTTAAATCAATACCGCAAGAGGGTTTGGACGTGCAAAGTAACGGGAAAAACTGGCTTGACTTATGAACAGGCATTGGTGTCAGAGAAGCTTGCTACTGAGAAAGTTCAACAGATTCCGGAAGAATTAATGGCACCGGCACTTAGGATTATTCAGTACAGTAGGCAGAAGTTTATGGGAGGACAACTTGCTTCATTCCAAGGCATGCTCCCTTTGAAGGACCTTGTTGATTCTATTGCCGATAAGTTGAAGGAGCAGTTGGTTGCAGGCTCTCAATTGTATGGAAAAAAGAATGAAAGAGTGTGTCCTTGCAAAATATTGAGAGTGATGCAGAAAGATGCTGATACTGTCAGCTATGTGGTGGCTTGGCTAGATGAAAGCAATAATGTTATTGAAAGAGAAGAAGTCAGTTCTCAAGATTTGGTGCAGAAGAAGCCACCTTTTAGTAAAAATATTTTGAAGTCTTTTGTCCGTGAATGTACATATCGAAATGCTCCTTGGGTTTTACATGATAAACTTGCAAAAAATCATGGAATCTCAACTGACATTCCAGAGGAGTTGAGAGGAAAGGTTTCCTTTAACAATGGACTCGTGGTCTTCACCAAAAAAAGAAAGCACGAGGAAGAGTCTATCAAATATCCAATTGATGATCTATTAGTGAAGCCTAGTCCAGATGATCCTGTTTTCAGTAGTCGTCCTTCTCCATCAAGAGACTTTAATGTTCCAATTCATTGTGTAGGGGATCTCTTAATGGTTTGGGACTTTTTTATGTCTTTTGGTAAACTGTTACAATTGTCACCGTACTCTCTCAAAGATTTTGAAAATGCAATCTGTCACAAGGATAGCAATGTCGTTCTCCTGGTGGAATCTCTTGCAGTACTCTTTCGTGTGCTCATCAAAGGTGACGATGAATACTATGCAGCTGTTCAAGATAAATTACCGAAGAAGATTACAATGATTAGTTGGAAAGACTATTTATGCAAGTTTTTAGAAATGATCAAAATTCCCAAGCTGCGGCAGTATGAAGCAACAATTAAACGGGGACGTTATAGTTATGTAGATGTCAATGCTAAATTAGAAATCTTTTCCGAATTAGTCAATCGAGCTCTTGATACAGCTATTGTCAGGGAAAAATTGCATGAGTTTATTGAACGAAGGCGGGTACTGGGGGCTGCTAAAAGGGAAGAAGCAATTGAAGCTTCTGCAAAGAGAAGAAAAGAAAAGGAGCAGTTGAAAGCTGATTCTGGAAGCACCTGTAGTGAGAATGGGCATGATCTTGATCAGGATGCAACTGTCTCAGCAGATAATAATCACAGAATACAGAATGGTAGTATTAGAAAGAATAGAAACAGTGAGACAGAATCATCTACGCAAAAATATGCATTGGATAGTGGTATCAAGCATTCAAACCTTGCTTCAAAAATGTCAGTTGAAAAGTTTGATTCTGAGCTTAATCAATCTGCAGTATGCGGAAAAGTATACAACAGAAAGGAATCACAGAAACAACCAATGGGTGATAAGTATCAATCAGAGAAAAGCTACGAACAAAGGAGACAATATTTTGATCGGGAGATAGAGAAATGGTGTGTTCGTACAAGTTTCCTAGGTATGGACAGATATTACAATAGGTATTGGTGGTTTTACCGTGATGGAAGGATATTTGTTGAAAGTCCTGAATCCAATGAGTGGGGATACTACAGTAGCAAAGGAGAGCTTGATGGATTGATGAGTTCACTGAATTGCAAAGGCGAGAGGGAGAGGGCACTGCTAAAACAACTGAAAAAATATTATGGTAGAATATGCTCGGAATTGCAGAAAAAATCAAAGGATTTGTTGCATAAGACTACCCTGGACGATTCTGTGGTCAGAAGGTCTACCCGTGTTCGTGCACCACCTAGGAAAAATCCTGCCAAGGCTTTCATTAGATATGTAAACAAGTGGAAAGAAGAGTAA 2217 0.4037 MVRRKGVETACRESLRRDEHGNAEARRPERRKEWRVQTKDLRLYIPMPLLRRKPFALAEPPNDLEPCESLFQIRFTKEVFRDYNDYLNRLNQYRKRVWTCKVTGKTGLTYEQALVSEKLATEKVQQIPEELMAPALRIIQYSRQKFMGGQLASFQGMLPLKDLVDSIADKLKEQLVAGSQLYGKKNERVCPCKILRVMQKDADTVSYVVAWLDESNNVIEREEVSSQDLVQKKPPFSKNILKSFVRECTYRNAPWVLHDKLAKNHGISTDIPEELRGKVSFNNGLVVFTKKRKHEEESIKYPIDDLLVKPSPDDPVFSSRPSPSRDFNVPIHCVGDLLMVWDFFMSFGKLLQLSPYSLKDFENAICHKDSNVVLLVESLAVLFRVLIKGDDEYYAAVQDKLPKKITMISWKDYLCKFLEMIKIPKLRQYEATIKRGRYSYVDVNAKLEIFSELVNRALDTAIVREKLHEFIERRRVLGAAKREEAIEASAKRRKEKEQLKADSGSTCSENGHDLDQDATVSADNNHRIQNGSIRKNRNSETESSTQKYALDSGIKHSNLASKMSVEKFDSELNQSAVCGKVYNRKESQKQPMGDKYQSEKSYEQRRQYFDREIEKWCVRTSFLGMDRYYNRYWWFYRDGRIFVESPESNEWGYYSSKGELDGLMSSLNCKGERERALLKQLKKYYGRICSELQKKSKDLLHKTTLDDSVVRRSTRVRAPPRKNPAKAFIRYVNKWKEE 738
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01875 738 ProSiteProfiles WAC domain profile. 68 187 IPR013136 -
Vimu10g01875 738 Pfam ATP-utilising chromatin assembly and remodelling N-terminal 70 147 IPR013136 -
Vimu10g01875 738 MobiDBLite consensus disorder prediction 488 502 - -
Vimu10g01875 738 MobiDBLite consensus disorder prediction 1 31 - -
Vimu10g01875 738 Pfam DDT domain 332 388 IPR018501 -
Vimu10g01875 738 SMART testlast3 331 392 IPR018501 -
Vimu10g01875 738 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 619 684 IPR028941 -
Vimu10g01875 738 MobiDBLite consensus disorder prediction 503 549 - -
Vimu10g01875 738 ProSiteProfiles DDT domain profile. 331 392 IPR018501 -
Vimu10g01875 738 PANTHER BROMODOMAIN ADJACENT TO ZINC FINGER DOMAIN, 2A 292 736 - -
Vimu10g01875 738 Coils Coil 482 502 - -
Vimu10g01875 738 MobiDBLite consensus disorder prediction 488 549 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01875 Vimu-Chr10 26894251 26905642 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Vimu10g01875 WAC_Acf1_DNA_bd 9.4e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01875 - - gmx:100784607 1034.25