Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01869 ATGGATAAGTACGAGGCTGTTAAGGAATTGGGAGCAGGCAATTTTGGGGTGGCCAGGCTTATGAGGAACAGGGTCACCAAGGAGCTCGTAGCCATGAAATACATCGAGCGTGGCCCAAAGGTGGTTTTGACTCCCACACATTTGGCAATTGTGATGGAGTATGCAGCAGGAGGAGAGCTCTTTGAGAGGATATGCAGTGCTGGCAGGTTCAGTGAAGATGAGGCTAGATATTTCTTTCAGCAGCTGATCTCTGGTGTCCATTTCTGTCATACAATGCAAATATGCCACCGAGATTTGAAGCTAGAAAATACCCTTTTAGATGGAAGTCCTGCTCCTCGGTTAAAAATTTGTGACTTCGGTTACTCCAAGTCATCTTTGCTGCATTCACGACCCAAATCAACAGTTGGAACACCTGCTTATATAGCACCGGAAGTTCTTTCAAGGCGAGAGTACGATGGAAAGTTGGCTGATGTATGGTCGTGTGGAGTGACTCTTTATGTCATGCTGGTTGGAGCATACCCCTTTGAGGATCAGGATGACCCTAGGAATTTTAGGAAAACAATTCAGCGTATAATGGCTGTTCAATACAAAATCCCTGATTATGTCCACATATCTCAAGATTGTAGACAACTCCTCTCTCGTATATTTGTTGCAAATCCATTGAGGAGAATTACTATTAAGGAAATTAAGAATCACCCATGGTTTTTGAAGAATCTTCCAAGGGAGCTAACTGAATCAGCTCAAGCTATTTATTACCAGAGGGACAGTCCAAACTTTCACCTTCAAAGTGTGGATGAGATAATGAAAATTGTGGGAGAGGCAAGAAATGCACCTCCAGTATCTAGGCTGGTCAAAGGTTTTGGTTGGGAAGGTGAAGAAGATTTGGATGAAGAAGTGGAGGAAGAGGAGGATGAAGAAGATGAGTATGATAAGAGGGTCAAAGAGGTTCATGGAAGTGGGGAATTCCAAATTAGTTAA 978 0.4325 MDKYEAVKELGAGNFGVARLMRNRVTKELVAMKYIERGPKVVLTPTHLAIVMEYAAGGELFERICSAGRFSEDEARYFFQQLISGVHFCHTMQICHRDLKLENTLLDGSPAPRLKICDFGYSKSSLLHSRPKSTVGTPAYIAPEVLSRREYDGKLADVWSCGVTLYVMLVGAYPFEDQDDPRNFRKTIQRIMAVQYKIPDYVHISQDCRQLLSRIFVANPLRRITIKEIKNHPWFLKNLPRELTESAQAIYYQRDSPNFHLQSVDEIMKIVGEARNAPPVSRLVKGFGWEGEEDLDEEVEEEEDEEDEYDKRVKEVHGSGEFQIS 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01869 325 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Vimu10g01869 325 MobiDBLite consensus disorder prediction 291 309 - -
Vimu10g01869 325 Gene3D Transferase(Phosphotransferase) domain 1 1 277 - -
Vimu10g01869 325 PANTHER SERINE/THREONINE KINASE 3 273 - -
Vimu10g01869 325 Pfam Protein kinase domain 41 235 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g01869 325 SUPERFAMILY Protein kinase-like (PK-like) 2 267 IPR011009 -
Vimu10g01869 325 ProSiteProfiles Protein kinase domain profile. 1 235 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g01869 325 MobiDBLite consensus disorder prediction 291 325 - -
Vimu10g01869 325 SMART serkin_6 4 235 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g01869 325 ProSitePatterns Serine/Threonine protein kinases active-site signature. 94 106 IPR008271 GO:0004672|GO:0006468
Vimu10g01869 325 FunFam Serine/threonine-protein kinase SRK2A 55 243 - -
Vimu10g01869 325 Coils Coil 292 312 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01869 Vimu-Chr10 26831679 26834497 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01869 3 238 CBL-interacting serine-threonine protein kinases AT4G24400 39.259 1.08e-55 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Vimu10g01869 Pkinase 1e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01869 K14498 - gmx:547811 591.267