Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01863 ATGGGTAGATCTCCTTGTTGTGAGAAGGAACACACAAACAAAGGAGCTTGGACCAAAGAGGAAGACGAACGCCTCATCAATTACATCAAACTCCATGGCGAAGGTTGTTGGAGATCCCTCCCCAAAGCTGCTGGCTTGCTCAGATGTGGCAAGAGTTGCAGACTCAGATGGATAAATTACCTCAGACCTGATCTAAAGAGAGGCAACTTCACTGAAGACGAAGACGAACTCATCATTAACCTCCATAGCTTACTTGGAAACAAATGGTCTCTGATTGCCGCCAGGTTACCTGGAAGAACCGATAACGAAATCAAAAACTATTGGAACACTCACATCAAGCGCAAACTCTACAGCCGCGGAATCGACCCGCAAACCCATCGACCCATCAACGCCGCCTCCACCCCTCCGCCAACCGCGGTTTCGCCTCCCTCCACCGCCGCTGTCCCTGTGGCAACGTCATCGTCCAACAAAAAAATAAACAGCGACAGCATTAGCAGCTCCAACACCCTCGCCCATGATGTTGTTATTACCAACAACAACATCAACAACAGTAACAACAGCAACGGTTTTCATTTGGTGAGCCATAGTTGTTATGCCAACGCCATAACGAAGGTTGGAACCGACGAAGATTCTAACAGCAGCAGCGGCGTTACCGTGGAAGAATCCCTCCCTCACCATCAACTCAACTTGGACCTTTCCATTGGCCTTCCCTCTTCTCGGCAAGTTTCTTCTTCGGTGAACCCAGAAAATTTGAAAGCGCAAGAGCATGATCAAAAACCGCATGTGTTGTACAAGTGGTATGGGAACATTACTGGGCAAAGTGTTTGTCTTTGTTACAGTCTAGGGCTTCAAAGCGATCAAGCTTGTTATTGCAAAGGCATGGGTGCTACTGCTACTGCTACCACGGTTACTACAACTGCCACAGATAGTAATCTATATAGATTTTACAGACCCATGAATATTTAG 966 0.4731 MGRSPCCEKEHTNKGAWTKEEDERLINYIKLHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEDEDELIINLHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKLYSRGIDPQTHRPINAASTPPPTAVSPPSTAAVPVATSSSNKKINSDSISSSNTLAHDVVITNNNINNSNNSNGFHLVSHSCYANAITKVGTDEDSNSSSGVTVEESLPHHQLNLDLSIGLPSSRQVSSSVNPENLKAQEHDQKPHVLYKWYGNITGQSVCLCYSLGLQSDQACYCKGMGATATATTVTTTATDSNLYRFYRPMNI 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01863 321 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vimu10g01863 321 CDD SANT 69 112 IPR001005 -
Vimu10g01863 321 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 230 - -
Vimu10g01863 321 CDD SANT 16 61 IPR001005 -
Vimu10g01863 321 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vimu10g01863 321 Gene3D - 14 66 - -
Vimu10g01863 321 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vimu10g01863 321 MobiDBLite consensus disorder prediction 145 164 - -
Vimu10g01863 321 FunFam Myb transcription factor 68 136 - -
Vimu10g01863 321 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vimu10g01863 321 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Vimu10g01863 321 FunFam MYB-related transcription factor 13 66 - -
Vimu10g01863 321 SMART sant 13 63 IPR001005 -
Vimu10g01863 321 SMART sant 66 114 IPR001005 -
Vimu10g01863 321 SUPERFAMILY Homeodomain-like 13 108 IPR009057 -
Vimu10g01863 321 MobiDBLite consensus disorder prediction 123 164 - -
Vimu10g01863 321 Gene3D - 68 134 - -
Vimu10g01863 321 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01863 Vimu-Chr10 26683690 26684856 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01863 1 238 MYB Transcription Factor Family AT4G09460 57.983 3.22e-90 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vimu10g01863 Myb_DNA-binding 4.8e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01863 K09422 - gmx:778033 460.299