Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01857 ATGGCCGCAGAAATATGTGGCGCGTCTGTATTCTTATCCGCTAAAACTCAGCTGCAAGTGCAACTGCAACAACAACACCACCAGCGACGCGCGTTCATCCATGCTCAACGAAGCAGAACAAGAAAAATCACTACCAGGTTCCACTCATCCAAACGCTGCTTTAGTTCCGGCTTTCCAAATGCTTCCACGTTTCGCCGCGGTTTTGTGTGCCAGGTCGCCAGCACCGACTTCGAATCCGCCGCCAAAGCCGGCGAGCATCGTCTCTCTAAGGTGCCGGTGCGTAATATAAGAAACTTTTGCATCATTGCTCATATTGACCACGGGAAATCGACGTTGGCGGATAAGTTGCTTCAGGTTACTGGCACGGTGCACCAGCGAGAAATGAAGGACCAGTTTCTCGATAACATGGACTTGGAGAGAGAAAGAGGCATCACTATTAAGCTCCAGGCAGCTCGAATGCGTTATGTGTTTCAAAATGAACCTTATTGCTTGAATCTCATTGATACACCAGGTCATGTCGACTTCTCGTATGAGGTTTCACGGTCACTTGCTGCATGTGAGGGTGCTCTTCTAGTAGTAGATGCTTCTCAGGTTTTGAACAAAATAGATCTTCCGGGTGCAGAACCAGATCGAGTTATCAAGGAGATTGAAGAGATTGTAGGTCTAGATTGTAGCAATGCGATTCTCTGCTCTGCAAAGGAAGGAATAGGTATAATTGATATTCTCAATGCAATTGTTGCAAGAATCCCCCCACCTGAAGATACATCTAAAAGACCATTGAGGGCTTTAATATTTGACAGCTACTATGATCCATATAGAGGTGTTATTGTATACTTTCGAGTTGTAGATGGGTCTATAAAGAAAGGTGACAGAGTTTATTTCATGGCTAGTGGGAAGGATTACTTTGCTGATGAAATTGGAGTTTTGTCTCCCAATCAACTTCAAGTTGAAGAACTGTATGCTGGTGAGGTGGGCTATCTATCTGCATCAATAAGAACAGTAGCTGATGCTAGAGTGGGTGACACTATTACTCACTATGGCAGAAAGGCTGATAATTCACTTCCTGGATACGAGGAAGCCACTCCTATGGTGTTCTGTGGCTTGTTTCCTGTTGATGCTGACCAATTCCCTGATCTGCGTGATGCACTTGAAAAGCTACAACTCAATGATGCTGCACTAAAGTTTGAACCTGAGACCTCGAGTGCCATGGGGTTTGGCTTTAGATGTGGGTTTCTGGGTCTTCTTCATATGGAAATTGTCCAGGAGAGACTTGAGAGAGAATACAATTTGAGCTTGATAACAACTGCTCCAAGTGTTGTGTACAGAGTAAACTGTGTAAATGGTGATACTGTTGAGTGCTCAAACCCATCTATACTTCCTGAGCCTGGACAAAGGAAATCAATTGAGGAGCCATTTGTTAAGATTGAGATGCTTACACCAAAAGACTACATTGGTTCACTTATGGAACTGGCACAAGAAAGAAGAGGGCAGTTTAAAGAATTGAAATTTATTGCTGAAAATAGGGCATCAATTGTCTATGAATTACCATTAGCAGAGATGGTTGGTGATTTCTTTGATCAGTTGAAGTCAAGAAGTAAGGGTTATGCTAGTATGGAGTATACGTTTGTTGGGAATGATGGGCTTCTTAAGTTAATAGTTGTCTTTGAAGAAGTTAGACGAGAGGCGTATTCTGTGGGAAGGGCTTTGACTTTGAAGTTGAAGGAGCTCATACCACGACAAATGTTTAAAGTACCAATTCAAGCATGTATAGGATCAAAAGTGATTGCCAGCGAAGCGATATCTGCAATACGGAAGGATGTACTGGCCAAATGCTACGGTGGGGATATTTCAAGAAAAAAGAAATTGCTTAAGAAACAGGCTGAAGGAAAGAAAAGGATGAAGTCTATTGGTAAAGTTGATGTTCCCCAAGAAGCTTTCATGGCAGTTTTGAAACTTGAAAAGGAGGTAATATGA 1974 0.4281 MAAEICGASVFLSAKTQLQVQLQQQHHQRRAFIHAQRSRTRKITTRFHSSKRCFSSGFPNASTFRRGFVCQVASTDFESAAKAGEHRLSKVPVRNIRNFCIIAHIDHGKSTLADKLLQVTGTVHQREMKDQFLDNMDLERERGITIKLQAARMRYVFQNEPYCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQVLNKIDLPGAEPDRVIKEIEEIVGLDCSNAILCSAKEGIGIIDILNAIVARIPPPEDTSKRPLRALIFDSYYDPYRGVIVYFRVVDGSIKKGDRVYFMASGKDYFADEIGVLSPNQLQVEELYAGEVGYLSASIRTVADARVGDTITHYGRKADNSLPGYEEATPMVFCGLFPVDADQFPDLRDALEKLQLNDAALKFEPETSSAMGFGFRCGFLGLLHMEIVQERLEREYNLSLITTAPSVVYRVNCVNGDTVECSNPSILPEPGQRKSIEEPFVKIEMLTPKDYIGSLMELAQERRGQFKELKFIAENRASIVYELPLAEMVGDFFDQLKSRSKGYASMEYTFVGNDGLLKLIVVFEEVRREAYSVGRALTLKLKELIPRQMFKVPIQACIGSKVIASEAISAIRKDVLAKCYGGDISRKKKLLKKQAEGKKRMKSIGKVDVPQEAFMAVLKLEKEVI 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01857 657 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 91 270 IPR027417 -
Vimu10g01857 657 Gene3D - 437 546 - -
Vimu10g01857 657 SUPERFAMILY Translation proteins 234 356 IPR009000 -
Vimu10g01857 657 Gene3D - 549 611 IPR038363 -
Vimu10g01857 657 FunFam Translation factor GUF1, mitochondrial 355 436 - -
Vimu10g01857 657 SUPERFAMILY EF-G C-terminal domain-like 361 439 IPR035647 -
Vimu10g01857 657 PANTHER TRANSLATION FACTOR GUF1-RELATED 198 652 IPR006297 GO:0005525
Vimu10g01857 657 Gene3D - 199 254 IPR027417 -
Vimu10g01857 657 Gene3D Elongation Factor G (Translational Gtpase), domain 3 355 436 - -
Vimu10g01857 657 CDD EF4_II 260 345 - -
Vimu10g01857 657 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 94 253 IPR000795 GO:0003924|GO:0005525
Vimu10g01857 657 FunFam Translation factor GUF1, mitochondrial 437 546 - -
Vimu10g01857 657 SMART EFG_C_a 467 558 IPR000640 -
Vimu10g01857 657 CDD LepA 97 252 - -
Vimu10g01857 657 CDD EF4_III 362 437 - -
Vimu10g01857 657 PRINTS GTP-binding elongation factor signature 181 192 IPR000795 GO:0003924|GO:0005525
Vimu10g01857 657 PRINTS GTP-binding elongation factor signature 165 175 IPR000795 GO:0003924|GO:0005525
Vimu10g01857 657 PRINTS GTP-binding elongation factor signature 141 149 IPR000795 GO:0003924|GO:0005525
Vimu10g01857 657 PRINTS GTP-binding elongation factor signature 98 111 IPR000795 GO:0003924|GO:0005525
Vimu10g01857 657 NCBIfam small GTP-binding protein domain 97 200 IPR005225 GO:0005525
Vimu10g01857 657 Hamap Elongation factor 4 [lepA]. 91 655 IPR006297 GO:0005525
Vimu10g01857 657 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 134 149 IPR031157 -
Vimu10g01857 657 Gene3D Translation factors 255 354 - -
Vimu10g01857 657 Pfam Elongation factor G C-terminus 468 543 IPR000640 -
Vimu10g01857 657 Pfam Elongation factor Tu domain 2 274 344 IPR004161 GO:0005525
Vimu10g01857 657 SUPERFAMILY EF-G C-terminal domain-like 468 544 IPR035647 -
Vimu10g01857 657 NCBIfam translation elongation factor 4 198 652 IPR006297 GO:0005525
Vimu10g01857 657 CDD lepA_C 470 545 IPR035654 -
Vimu10g01857 657 Gene3D - 89 198 IPR027417 -
Vimu10g01857 657 FunFam Translation factor GUF1, mitochondrial 255 353 - -
Vimu10g01857 657 Pfam Elongation factor Tu GTP binding domain 95 196 IPR000795 GO:0003924|GO:0005525
Vimu10g01857 657 Pfam GTP-binding protein LepA C-terminus 559 651 IPR013842 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01857 Vimu-Chr10 26545543 26555609 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01857 94 307 Eukaryotic Initiation Factors Gene Family AT3G22980 31.325 5.37e-22 99.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01857 K21594 - gmx:100809693 1147.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g01857 10 26545543 26555609 Vimu10g01857 10 26545543 26555609 ECH