Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01849 ATGAACGAAGCCCAAATTGAAATTACCATTCCTCACCTGTTCAGATGCCCCATCAGTTTGGACTTGTTCGAAGATCCTGTAACTTTGTCCACAGGCCAAACCTATGACAGATCAAGCATAGAGAAATGGTTCTCTGCTGGAAATCTCACATGCCCTGTAACAATGCAGAAGCTTCGTGATCCATCCATTGTTCCCAACCACACTCTTCGCCACTTGATCGATCAGTGGCTCCAATTGGGTCCCCAATTTGGTAACTCTGCTACTATTGATTATTTAGCCGCACTGAAGCACACCCTTGAATCTCCCCAATTGGAAAACAAGCTCCAAGCACTTGAGAAAATTACAGTTCTCTCTGATGAGTATTGCTCCTTCAGAAAATCTTGTTTCCATCAACTGAGTTTCTTGCCCCTACTTTTGGAACTTGTTTTTGGCACCGAGTTCTCAAACTGTCACATGAAGTTCACGGAGCTAGCACTTTCTTGCATTATAAAGTTGTTACCTCTTGTGAGTATGGAGCCTCTAAATATGATCAAAGATGAGTCTAAGTTGACAACGTTCCTGCTACTATTTGAAAAGGGAACCAGCTCGGTTAAGACTAGTCTTTGTCGTCTTATAGATTCAACGGCATCACCACAAACAGAAGAGGTATGTCACATGCTTGGACACTCTCAAAAACTGGTGCGTGAAATTGTGGTACTTGTTCGTCAAGGTTGTGAGGTTTCTAAGGTTGCAATTAAGGCCATGTTAGCATTATGTTCCTTGCAATCTAACCGTGACAATTTGGTGAGGGCAGGAGCAATTGATGGGGTCATAATATACATTTCAAGTTGTGAAACAAGGCAGAAGAACTTGGCCCCATTTGCGATGGCAATTATAAAGAACCTTCTGGTGCTAGAGAGTGCTAAAGAGGCACTGGTTAATCACCCTTATGGGGTTGCAACTTTGGTGAAGATGGTTTTCAGGGTGTGTAATCAAGAGTGTAGTGAGAGTGCTGTTGGGATACTTGCAATTGTTTGCCGAGATTTTGGTCGTGCAAGAGATGAAGCAATCGGTGCAGGAGTTTTGACTCAGTTGCTGTTTCTTCTCCAGAGTCAGTGTGGCCCCAGAACTAAAACAAAAGCAAGAATGCTGCTCAAGTTGCTAAGATCAAAGTGGATTGAGGAACCAAAACAGGTGTAG 1179 0.4317 MNEAQIEITIPHLFRCPISLDLFEDPVTLSTGQTYDRSSIEKWFSAGNLTCPVTMQKLRDPSIVPNHTLRHLIDQWLQLGPQFGNSATIDYLAALKHTLESPQLENKLQALEKITVLSDEYCSFRKSCFHQLSFLPLLLELVFGTEFSNCHMKFTELALSCIIKLLPLVSMEPLNMIKDESKLTTFLLLFEKGTSSVKTSLCRLIDSTASPQTEEVCHMLGHSQKLVREIVVLVRQGCEVSKVAIKAMLALCSLQSNRDNLVRAGAIDGVIIYISSCETRQKNLAPFAMAIIKNLLVLESAKEALVNHPYGVATLVKMVFRVCNQECSESAVGILAIVCRDFGRARDEAIGAGVLTQLLFLLQSQCGPRTKTKARMLLKLLRSKWIEEPKQV 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01849 392 CDD RING-Ubox_PUB 11 60 IPR045210 -
Vimu10g01849 392 PANTHER WDSAM1 PROTEIN 7 389 IPR045185 GO:0061630
Vimu10g01849 392 Pfam U-box domain 10 78 IPR003613 GO:0004842|GO:0016567
Vimu10g01849 392 Gene3D - 180 388 IPR011989 -
Vimu10g01849 392 SMART Ubox_2 13 76 IPR003613 GO:0004842|GO:0016567
Vimu10g01849 392 FunFam RING-type E3 ubiquitin transferase 10 81 - -
Vimu10g01849 392 SUPERFAMILY RING/U-box 6 78 - -
Vimu10g01849 392 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 84 IPR013083 -
Vimu10g01849 392 ProSiteProfiles U-box domain profile. 9 83 IPR003613 GO:0004842|GO:0016567
Vimu10g01849 392 SUPERFAMILY ARM repeat 236 381 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01849 Vimu-Chr10 26412499 26415038 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01849 5 388 U-box Gene Family AT1G49780 30.073 2.56e-42 151
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01849 - - gmx:100815247 685.256