Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01845 ATGGAAGATGCAAATTTCAACCTTCCTCCTGGTTTTTTCTTCTCTCCAACTGATGAAGAACTTGTTCTTCACTTTCTCTATTGCAAGACTTCTCTTATTCCATGCCATCCCAACATCATTCCAGACCTCGATTCTCGCCTTCATCCTTGGGAACTAAATGGTAAGGCTTTGTTAAGTGGGAATCAGTACTATTTCTTTACCAAAGTGAATGAAAACAGAACAACGGAAAATGGGTGTTGGAAGGAAATAGGTGTGACGGAACCTATATTTTCAACTTTTGACAAGAAAGTGGGAACGAAGAAGTACTTGGTATTCCACATTGGTGAAGCTCCACATGTTACTGAAACCAACTGGGTAATGCAAGAATATCATATATGTTCTTCTGGGTTTGACACTGCGTCCAATAGAAGTTCTAGGAGAAGACGAAAACATGATCAAAGTTGGAGCCAGTGGGTTTTGTGCAGAGTGTACGAGAAGATGAGGTCTGAAGGTGTAAACTGCTATAGCGATGACGATGAGAGTGGATCAGAGCTTTCATGGTTAGATGAAGTTTATCTGTCGTTGGATGATGATCTGGAAAAAATTGGCATGCCAAATTAG 600 0.405 MEDANFNLPPGFFFSPTDEELVLHFLYCKTSLIPCHPNIIPDLDSRLHPWELNGKALLSGNQYYFFTKVNENRTTENGCWKEIGVTEPIFSTFDKKVGTKKYLVFHIGEAPHVTETNWVMQEYHICSSGFDTASNRSSRRRRKHDQSWSQWVLCRVYEKMRSEGVNCYSDDDESGSELSWLDEVYLSLDDDLEKIGMPN 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01845 199 PANTHER NAC TRANSCRIPTION FACTOR 56 8 164 - -
Vimu10g01845 199 Gene3D NAC domain 17 163 IPR036093 GO:0003677|GO:0006355
Vimu10g01845 199 Pfam No apical meristem (NAM) protein 9 125 IPR003441 GO:0003677|GO:0006355
Vimu10g01845 199 ProSiteProfiles NAC domain profile. 8 159 IPR003441 GO:0003677|GO:0006355
Vimu10g01845 199 SUPERFAMILY NAC domain 6 158 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01845 Vimu-Chr10 26261151 26262125 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01845 7 163 NAC Transcription Factor Family AT1G61110 39.521 1.69e-34 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vimu10g01845 NAM 3e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01845 - - gmx:100170711 362.844