Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01844 ATGAAGAAACAAGGGTGTGAGGTTGAGGCAACAGACATAAACTACAACATCCGTTCAAAGGCAGCAGAGCAACCTTCTAAAATCTTCAGAAAATTTTCACAATTGAATAGGGAGGAAGATGGTCGTGAAGCAGATGAAGAACAAACTGAACAAAGATCATGCAGTGGAGTTAGGCATGTCCTCAAGAACGTGAACTGCATAGCAAAGCCAATGGAAATTCTGGCAATTGTTGGGCCAAGTGGGGCTGGGAAATCATCCCTTCTTAAGATCCTAGCTGGTAAAGCTAGTTCACGAAGTGGGTGTATCTTAGTGAATCAAGAGCCTGCGGATACAGCTGAGTTCAAAAAAATTTCAGGGTATGTTTTGCAAAAGGAGACCTTGTTTCCCTTACTTACGGTTGAAGAAACCATAATGTTTAGTGCAAAGCTAAGGTTACGTCTTCCTCAAGAACAACTATGCTCCAGGGTCAAGTCACTAATTCTAGAGCTTGGTCTTAGCCATGTTGCTAGGAATAGAATTGGAGATGACAGGGTCCGTGGCATATCTGGTGGTGAGAGGCGCCGAGTTTCCATTGGTGTTGAAGTCATACATGACCCAAAGGTACTGATGTTGGATGAACCAACTTCAGGGCTTGATAGTATCTCAGCTTTGCAAATAATTGATATGCTTAAAGTAATGGCTGAATCTAGGGGGCGAACTATAATCCTGACTATCCACCAACCCGGGTACAGAATGGTGAAGTTGTTCAACTCAATACTGTTATTGGCTGATGGTATTGTGTTGCACCATGGCTCTGTGGATTTTCTGGGTGTAAATCTAAGGCTAATGGGTTTAGAAATTCCTCTTCATGTTAATGTGGTTGAGTTTGCCATTGATTCCATTAAGACCATTCAGCAACATAAAAAATGTGGTGAGCAGGGTGAGAGTAGAAGTGGTAAGTTTACTTTGCAACAGCTCTTTCAACAATCCAAGTTAATTGATGAAGAAACCATTGGTGTGGGAATGGATATCACTTGTAATTTTGCAAATTCTGTATTGAGAGAAACTATGATTCTCACTCATAGATTCTCCAAAAATATCGTACGCACAAAGGAACTCTTTGCGTTCAGGACAATTCAAATGCTGGTTTCTGGAATGGTTTTGGGCTCAGTCTTTTGTAATCTCAAGGATGGTATGGACGGAGCGGAAGAAAGAGTGGGTCTCTTTGCTTTCGTTTTAACGTTTATGTTATCAAGCACCTCCGAAGCTCTACCAATTTTTCTGCAAGAAAGGGATATTATAATGAAAGAAATCTCTAGTGGAAGCTACAGAGTTTCATCTTATGCTATCGCCAATGGCCTAGTTTCCTTGCCATTTTTGCTCATACTAGCCATTTTATTCACAGTGCCTCTGTACTGGCTTATTGATCTCAACAGGAATTTTTCGGCATTTTTGTACTTTCTGATGCTAATCTGGCTAATTCTTTACACTGCAAATTCGGTAGTGGTATGTTTCAGTGCTGCAGTGCCTAATTTCATTGTTGGGAATTCAATGATTGCCGGTGCCATCGGTTCGTTTCTTCTTTTCTCTGGATACTTCATATCGAAACACCAAATTCCAAGTTACTGGATTTTCATGCATTATATGTCTCCATTTAAGTATCCCTTTGAAGGGTTTCTGATAAATGAGTTCTCCAACTCAAAAAAGTGCTTGGAGTACTTGTTTGGGGCATGTGTGGTGAGAGGAGAGGATGTACTTAAAGTAGCAGAGCTTGGAGGGGAGACTAGTAGATGGAAGAATGTTGGGGTGATGGTGTGCTTCATCCTGGTTTCCAGGTTCGTTTCTTTTGTAATTCTTAGGTACAGATGCTCACAAGGAATCGTCCTAAAAAGTTGA 1875 0.4101 MKKQGCEVEATDINYNIRSKAAEQPSKIFRKFSQLNREEDGREADEEQTEQRSCSGVRHVLKNVNCIAKPMEILAIVGPSGAGKSSLLKILAGKASSRSGCILVNQEPADTAEFKKISGYVLQKETLFPLLTVEETIMFSAKLRLRLPQEQLCSRVKSLILELGLSHVARNRIGDDRVRGISGGERRRVSIGVEVIHDPKVLMLDEPTSGLDSISALQIIDMLKVMAESRGRTIILTIHQPGYRMVKLFNSILLLADGIVLHHGSVDFLGVNLRLMGLEIPLHVNVVEFAIDSIKTIQQHKKCGEQGESRSGKFTLQQLFQQSKLIDEETIGVGMDITCNFANSVLRETMILTHRFSKNIVRTKELFAFRTIQMLVSGMVLGSVFCNLKDGMDGAEERVGLFAFVLTFMLSSTSEALPIFLQERDIIMKEISSGSYRVSSYAIANGLVSLPFLLILAILFTVPLYWLIDLNRNFSAFLYFLMLIWLILYTANSVVVCFSAAVPNFIVGNSMIAGAIGSFLLFSGYFISKHQIPSYWIFMHYMSPFKYPFEGFLINEFSNSKKCLEYLFGACVVRGEDVLKVAELGGETSRWKNVGVMVCFILVSRFVSFVILRYRCSQGIVLKS 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01844 624 Pfam ABC-2 type transporter 349 557 IPR013525 GO:0016020|GO:0140359
Vimu10g01844 624 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 58 268 IPR027417 -
Vimu10g01844 624 SMART AAA_5 70 267 IPR003593 GO:0016887
Vimu10g01844 624 MobiDBLite consensus disorder prediction 33 52 - -
Vimu10g01844 624 Gene3D - 48 275 IPR027417 -
Vimu10g01844 624 FunFam ABC transporter G family member 5 46 306 - -
Vimu10g01844 624 Pfam ABC transporter 61 209 IPR003439 GO:0005524
Vimu10g01844 624 ProSitePatterns ABC transporters family signature. 181 195 IPR017871 GO:0005524|GO:0016887
Vimu10g01844 624 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 41 282 IPR003439 GO:0005524
Vimu10g01844 624 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 7 605 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01844 Vimu-Chr10 26216818 26218692 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01844 59 287 Calmodulin-binding Proteins AT2G36910 25.000 9.21e-12 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01844 K05681 - gmx:100811164 1023.85