Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01838 ATGGAAAATGAAAGCCACACCAATTTGCCAAATGGCAACAATAATAATAAAGAACAAGATCGTTTTCTCCCTATTGTAAATGTCAAAAGAATCATGAAAAAGGCCATACCTGGCAGTGGAAAACTCTCCAAGGATGCAAAAGAAACAATTCAAGAATGTGTGTCTGAGAACTTTGTCACAGAATATAAAGAGATTGAAGGAGAGAAGCTTTACATTCTTAAGCAACTATGTTCTAAACAAAAGCTACATCAACAACAACATCCCCAACACCAAGCCCAAAATAACAATCTACCTTTAAGTAATAGTGTATATTCCTTTCCAATTAATTTCTTAGACATCTTATGTACCCACCGATCAACTATTGTCCTTACCATTCTCCCCAAATTTGATTCAGAAACATTTACAGCAGCAAGACCAAATAGATTCTTTGGGGCAATGGTAATAAAGTAA 450 0.3489 MENESHTNLPNGNNNNKEQDRFLPIVNVKRIMKKAIPGSGKLSKDAKETIQECVSENFVTEYKEIEGEKLYILKQLCSKQKLHQQQHPQHQAQNNNLPLSNSVYSFPINFLDILCTHRSTIVLTILPKFDSETFTAARPNRFFGAMVIK 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01838 149 SUPERFAMILY Histone-fold 6 56 IPR009072 GO:0046982
Vimu10g01838 149 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 4 59 IPR027113 GO:0001228|GO:0006355|GO:0016602
Vimu10g01838 149 MobiDBLite consensus disorder prediction 1 20 - -
Vimu10g01838 149 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 22 56 IPR003958 -
Vimu10g01838 149 Gene3D Histone, subunit A 10 61 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01838 Vimu-Chr10 26163166 26163817 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01838 2 60 CCAAT-HAP3 Transcription Factor Family AT4G14540 60.656 3.86e-20 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01838 K08065 - csin:114310096 94.7449