Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01836 ATGAAGCTTAATGTGGGCACTTATGATGTGAAGCTGACATATAAGGATCATAAGGAGAAGCTATTGACTTCCATCACCTTTCCCTTCAAAATCGCACACTTAGCATCTGGTGAGAAGAAAGGTGATGAAGGGAGAAGGAACCATCAGTTGTATAGTACTGTGACTTTGCGCCAGGAAGAGAAAAAGCACTACAACAACAAGGTTCATGTATATAGCTTTGGAGTTGTCCTATGGGAGCTACTAACAAACCGCATGCCATTTGAAGGGATGTCCAATTTACAGGCTGCTTATGTTGCTGCATTTAAGATCATTCGCATGCTCAATGCATTTATCTTCACTCTCTCACCACCATCTCCTCCTTTGGCAGTACCTAACAATGAACCTGAGGTGGCTACAACCAACAATGGCATCATTAGTGAGTTTTCTGCCCGAAAGAAAGGAAGGTTTGGGTTTCTTCGCCAATTGTTTTCTTTAAAGAGGACCAAAAACTAA 492 0.4187 MKLNVGTYDVKLTYKDHKEKLLTSITFPFKIAHLASGEKKGDEGRRNHQLYSTVTLRQEEKKHYNNKVHVYSFGVVLWELLTNRMPFEGMSNLQAAYVAAFKIIRMLNAFIFTLSPPSPPLAVPNNEPEVATTNNGIISEFSARKKGRFGFLRQLFSLKRTKN 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01836 163 Pfam Protein tyrosine and serine/threonine kinase 61 95 IPR001245 GO:0004672|GO:0006468
Vimu10g01836 163 Gene3D Transferase(Phosphotransferase) domain 1 29 148 - -
Vimu10g01836 163 SUPERFAMILY Protein kinase-like (PK-like) 61 108 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01836 Vimu-Chr10 26127454 26135171 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01836 49 163 MAP Kinase Kinase Kinase AT5G01850 52.980 5.24e-36 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Vimu10g01836 PK_Tyr_Ser-Thr 2.6e-05 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01836 - - gmx:100809251 185.267