Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01832 ATGAGCAACGCCTCACGAAAGCGCGCGGCGTCGGCGGTGGCTCCACAACCTCCGCCGCCAAAGCAAGTCTTAATGACTCAGGAAGAGGACTTCATGGACGAAGACGTGTTCATCGACCAAACCCTTGTTTCAGAAGATGAAGAGTCCATCATTCTCCGCGACATCGAGCAGCGCCAGGCCCTCGCTGCGCGGCTATCCAAGTGGACGCGTCCTCCTCTCTCCGATGATTACGTCGCACAATCTCGTGGCGTCGGTGCGTATTTTCCGTTAATTGGTTTCCCTTCGTCTAGGCTGGAGATTGATTATGTGATCGGGGAGAGTCACAGGGAGTTGCTGCCGAACTTGTCTGGACCTGCTGCTATTATCAGAATTTTTGGTGTTACGAAAGAAGGACACAGTGTTTGCTGCAATGTTCATGGCTTTGAACCATATTTCTACATCTCTTGCCCTCCTGGAATGGGTCCAGATGATATCTCTCATTTTCACCAAGCACTTGAGGGAAGGATGAGAGAAGCCAATAGAAATAGTAATGTAGGAAAATTCGTTCGCCGCATTGAAATGGTGCAGAGGAGAAGTATTATGTACTATCAGCAATCTGATTCTCAGCCCTTTCTCAAAATAGTAGTTGCACTCCCAACAATGGTTGCCAGCTGTCGTGGTATTCTTGATAGGGGTATTCAGCTTGATGGTCTGGGAATGAAGAGCTTCTTGACTTATGAAAGCAATGTACTTTTTGCTCTACGGTTCATGATTGATTGCAACATAGTTGGTGGAAATTGGATTGAAATTCCGGCAGGAAAATATAAAAAGATAGTGAAAAGCTTGTCTTATTGCCAGTTGGAGTTTGATTGCCTGTATTCTGATTTGATTAGTCATGCTCCAGAAGGGGAGTATTCAAAGATGGCTCCATTTCGCATATTGAGTTTTGACATTGAGTGTGCTGGTCGGAAAGGTCATTTTCCCGAGCCTAGCCATGATCCTGTTATCCAGATTGCTAATTTGATTACTTTACAAGGAGATGACCAGCCACTTATTCGTAATGTAATGACCCTTAAATCATGTTCTCCTATTGTTGGTGTTGATGTGATGTCATTTGATACGGAAAGAGAAGTCCTGCTAGCTTGGAGGGATTTTCTTCGGGAAGTGGACCCTGATATTATTATTGGATATAACATCTGCAAATTTGACCTGCCATATCTTATTGAGAGAGCTGCAAACCTGAAGATAGCAGAATTTCCAATTCTTGGCCGTATTAGGAATAGTAGAGTTCGGGTAAAGGATACAACTTTTTCATCAAGGCAGTATGGGACCAGGGAAAGTAAAGAAGTTACAGTAGAAGGGAGAGTTCAGTTTGACTTACTCCAGAAAGAGGATGTTCATCATTCTATTATATCTGATCTTCAGAATGGAACTGCAGAAACTAGGAGGCGCCTTGCTGTGTATTGTTTGAAGGATGCATATCTTCCTCAGCGGCTTTTGGATAAACTGATGTTCATTTACAACTATGTGGAGATGGCTCGAGTGACAGGTGTTCCAATTTCTTTTCTACTTTCCAGAGGCCAAAGCATTAAGGTACTTTCTCAACTTCTTAGGAAGGCAAGACAGAAGAATCTGGTCATTCCTAATGTCAAGCAGGTTGGGTCTGAACAAGGAACATTTGAAGGTGCCACTGTGTTGGAGGCAAGAGCTGGATTTTATGAAAAACCAATCGCTACGTTAGATTTTGCATCCCTGTATCCATCTATTATGATGGCCTATAATTTATGTTATTGCACTCTGGTCACTTCTGAAGATGCTCGCAAGCTCAACATCCCTTCAGAGTCCCTGAACAGAACTCCATCTGGTGAAACATTTGTTAAATCAAATCTGCAGAAGGGAATACTGCCTGAAATACTTGAAGAGCTATTAACAGTCCGTAAAAGGGCAAAAGCAGATTTAAAGGAGGCAAAGGATCCCCTGGAGAGGGCAGTGCTAGATGGTAGGCAGCTGGCCCTGAAAATTAGTGCAAATTCCGTGTATGGGTTTACTGGGGCTACCATTGGTCAGTTACCATGTTTAGAGATATCATCGAGTGTAACAAGCTATGGTCGACAAATGATTGAGCACACAAAAAAACTGGTGGAAGATAAATTCACAACACTTAATGGCTATGAACACAATGCCGAGGTAATATATGGAGACACGGATTCAGTCATGGTACAATTTGGTGTTTCTGCCGTAGAACAGGCCATGAACTTGGGTCGAGAAGCTGCTGAATATATAAGTGGAACATTCACAAAACCCATAAAGCTAGAATTTGAGAAGGTTTATTATCCATATCTCTTGATTAGCAAGAAGAGATATGCTGGTTTGTTTTGGACAAAACCAGACAAGTTCGACAAAATGGACACTAAAGGTATTGAAACAGTTCGAAGAGACAATTGTTTGCTGGTCAAAAACCTGGTGAATGATTGTCTTCACAAAATACTTATTGACAGGGACATTCCAGGGGCTGTCCAGTATGTCAAGAACGCAATTTCAGATCTTCTCAGGAATCGTATGGATTTATCACTGTTGGTTATTACAAAGGGTTTAACAAAGACAGGAGATGATTATGAAGTAAAGGCAGCTCATGTTGAACTTGCTGAAAGGATGCGCAAGCGAGATGCTGCCACTGCTCCAAATGTTGGAGACAGAGTACCTTATGTAATTATCAAAGGTGCAAAAGGTGCGAAGGCATATGAAAAATCAGAGGACCCTATTTATGTTCTAGAAAACAACATACCAATAGATGCTCAATACTATCTTGAGAATCAAATCAGCAAGCCGATCCTCAGAATTTTTGAGCCAATTCTGAAGAATGCTAGCAGAGAACTTCTCCATGGAAGTCATACAAGATCTATTTCTATTTCTACTCCCTCAAATAGTGGTTTATGGAAATTTGCTAAGAAAGAGCTTACCTGCATTGGCTGTAAAGCTGTATTAGGGTGGCATTGGTCTACGTTAGAAATTGAAATTTTGGTTTGGTTTCCCGTAGTGTTGACCGGAAAGCAAGATTCTTCAGATGTTTCTGTTCACATTGCAAAGGAAGGGAAGCTGAGCTATATTGTAAAACGGTATCTCGAGGACAAAAGTCACAAAACAATTGGTGTTGTGGTTGTAGTGTCTGAGCTGGAGATGCATTTTGGGAAGTTGTGGACACAGTGTCAGGAGTGCCAAGGTTCACTTCATCAAGATATTCTCTGCACAAGTCGGGATTGTCCAATCTTTTATCGACGAAAGAAGGCACAGAAAGAAATGTCCGAAGCACAATCACAATTGGACCGGTGGAGCTTTTAA 3318 0.4228 MSNASRKRAASAVAPQPPPPKQVLMTQEEDFMDEDVFIDQTLVSEDEESIILRDIEQRQALAARLSKWTRPPLSDDYVAQSRGVGAYFPLIGFPSSRLEIDYVIGESHRELLPNLSGPAAIIRIFGVTKEGHSVCCNVHGFEPYFYISCPPGMGPDDISHFHQALEGRMREANRNSNVGKFVRRIEMVQRRSIMYYQQSDSQPFLKIVVALPTMVASCRGILDRGIQLDGLGMKSFLTYESNVLFALRFMIDCNIVGGNWIEIPAGKYKKIVKSLSYCQLEFDCLYSDLISHAPEGEYSKMAPFRILSFDIECAGRKGHFPEPSHDPVIQIANLITLQGDDQPLIRNVMTLKSCSPIVGVDVMSFDTEREVLLAWRDFLREVDPDIIIGYNICKFDLPYLIERAANLKIAEFPILGRIRNSRVRVKDTTFSSRQYGTRESKEVTVEGRVQFDLLQKEDVHHSIISDLQNGTAETRRRLAVYCLKDAYLPQRLLDKLMFIYNYVEMARVTGVPISFLLSRGQSIKVLSQLLRKARQKNLVIPNVKQVGSEQGTFEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYCTLVTSEDARKLNIPSESLNRTPSGETFVKSNLQKGILPEILEELLTVRKRAKADLKEAKDPLERAVLDGRQLALKISANSVYGFTGATIGQLPCLEISSSVTSYGRQMIEHTKKLVEDKFTTLNGYEHNAEVIYGDTDSVMVQFGVSAVEQAMNLGREAAEYISGTFTKPIKLEFEKVYYPYLLISKKRYAGLFWTKPDKFDKMDTKGIETVRRDNCLLVKNLVNDCLHKILIDRDIPGAVQYVKNAISDLLRNRMDLSLLVITKGLTKTGDDYEVKAAHVELAERMRKRDAATAPNVGDRVPYVIIKGAKGAKAYEKSEDPIYVLENNIPIDAQYYLENQISKPILRIFEPILKNASRELLHGSHTRSISISTPSNSGLWKFAKKELTCIGCKAVLGWHWSTLEIEILVWFPVVLTGKQDSSDVSVHIAKEGKLSYIVKRYLEDKSHKTIGVVVVVSELEMHFGKLWTQCQECQGSLHQDILCTSRDCPIFYRRKKAQKEMSEAQSQLDRWSF 1105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01832 1105 Gene3D - 456 554 IPR036397 GO:0003676
Vimu10g01832 1105 FunFam DNA polymerase 99 274 - -
Vimu10g01832 1105 SUPERFAMILY Ribonuclease H-like 120 517 IPR012337 -
Vimu10g01832 1105 FunFam DNA polymerase 303 456 - -
Vimu10g01832 1105 Gene3D DNA Polymerase, chain B, domain 1 98 272 - -
Vimu10g01832 1105 SMART polmehr3 302 737 IPR006172 GO:0000166|GO:0003676|GO:0003887
Vimu10g01832 1105 Gene3D - 305 455 IPR036397 GO:0003676
Vimu10g01832 1105 Gene3D - 799 954 IPR042087 -
Vimu10g01832 1105 Pfam DNA polymerase family B, exonuclease domain 128 455 IPR006133 -
Vimu10g01832 1105 PRINTS DNA-directed DNA-polymerase family B signature 662 674 IPR006172 GO:0000166|GO:0003676|GO:0003887
Vimu10g01832 1105 PRINTS DNA-directed DNA-polymerase family B signature 723 731 IPR006172 GO:0000166|GO:0003676|GO:0003887
Vimu10g01832 1105 PRINTS DNA-directed DNA-polymerase family B signature 570 583 IPR006172 GO:0000166|GO:0003676|GO:0003887
Vimu10g01832 1105 SUPERFAMILY DNA/RNA polymerases 536 946 IPR043502 -
Vimu10g01832 1105 CDD DNA_polB_delta_exo 298 503 - -
Vimu10g01832 1105 FunFam DNA polymerase 799 955 - -
Vimu10g01832 1105 Gene3D Palm domain of DNA polymerase 555 782 IPR023211 -
Vimu10g01832 1105 Gene3D Helix hairpin bin 626 678 - -
Vimu10g01832 1105 Pfam C4-type zinc-finger of DNA polymerase delta 1040 1086 IPR025687 -
Vimu10g01832 1105 MobiDBLite consensus disorder prediction 1 23 - -
Vimu10g01832 1105 FunFam DNA polymerase 626 678 - -
Vimu10g01832 1105 ProSitePatterns DNA polymerase family B signature. 725 733 IPR017964 GO:0000166|GO:0003676
Vimu10g01832 1105 Pfam DNA polymerase family B 511 944 IPR006134 GO:0000166|GO:0003677
Vimu10g01832 1105 PANTHER DNA POLYMERASE CATALYTIC SUBUNIT 455 1071 - -
Vimu10g01832 1105 NCBIfam DNA polymerase (pol2) 532 942 - -
Vimu10g01832 1105 CDD POLBc_delta 552 945 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01832 4 1105 Core DNA Replication Machinery Family AT5G63960 73.560 0.0 1718
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01832 K02327 - gmx:100817379 1895.94