Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01829 ATGAAGTTAATCGGCGACGGAGCCGATGGCCGGAAAGTGCTCGTCGGAGTGAAATTGGATCCTTCCAGCCGCGAATTGCTGACGTGGGCGCTCGTCAAAGTCGCTGAGCCCGGGGACATCGTCATTGCGCTTCACGTCCTCGACTCAATCACTGAGGGAACAGCATCGCTGTTATCTCTCGTGAAGACTTTCGACTCCGTTCTCGCCGTTTATGAAGGCTTCTGCAACCTAAAACAGGTTGGTCTGAGGCTCAAAGTGTGTCGCGGTGACTCGGTTCGGAAGGTTCTGGTGCAAGAGGCTAAGACGTTTGGCGTTTCCACGGTGATTTTGGGAACTTCTAAGTCTCATCACACTATTCGCTCGTCCGCGTGGGTCGCGAAGTACTGCGCGAAGAAATTGCCCAAGTGTATCTCTGTTTTCTCTGTAGATAATGGAAAAATTGCTTTCCGAAGAGAAGCTAATGGAAATTGTAGTGATCGAGAAAAATCACCCGAAGGGTCAAGTTTGTCGCCAAAGTCGTTGGTGGTGTATACAAAGAAGAATATGAAGACTTGCGAAAGTTGTGCATTGCAAGAGATTTCTGGGACTGAGTTTGAGCGAGGTTTCTGTGATGCTGTTGAAAAGGGTGATTCGCTTGCTTTGGTCCCGTTTAAGAAACTTGAAGATGGTCCTTGTTTTTCAGTTGTTGTGGATAATTCGAAGCGTAAACCTGGCTGGTCAGTGCTTCGCAATGTGTTTCATCACAAGAAGCATTCCCCAAAATCTTCCACGAAAAATACATATATTTTTCAACGGGCGTTGAGGCAGCCGAGTTTTCATTCTTCTGCTGTAGTCCATCCAGATCATAAACAAATTGGTATTGAGCAGATTGATGATTCCCCTCTCGATGGGGTGAGTGGTGCCATTGTGCCATTTGGATCTTCTACTATTTTTACTCCTCCCTCCATTAGCTATGAGTCGGGTAACCTACCTGAAGAATTGTTGATATTACAAGAAAAGTACTCATCTTCGTGCACTTTACATAGTTTGCAGGAGCTTGTATCTGCAACCTCCAACTTCGCAGCAGAGAATTTGGTTGGCAAAGGTGGTTGTAGTTATGTTTACCGAGGATGTCTTCCAGATGGCAAGGAATTGGCCGTGAAAATTTTGAAGCCGTCTGAAAACGTGGTAAAGGAGTTCGTTCAGGAAATTGAGATCATTACGACTTTGTGCCACAAGAGCATAATATCTATATCTGGCTTTTGTTTAGAGGGCAACCATTTGCTACTAGTATATGATTTTTTGTCAAGGGGAAGCCTAGAAGAAAACCTCCATGGCAACAAGGCAGATTGTAGTGCATTTGGTTGGCAAGAAAGGTACAAGGTGGCTGTGGGTGTAGCTGAGGCACTGGATTATCTGCATAATGGCTGTGCTCAGCCTGTTATCCATAGGGATGTGAAATCTTCTAATATCCTTCTTTCAGATGATTTTGAGCCTAAGCTTTCAGATTTTGGACTGGCTAGTTGGGGTTCATCTTCTTCCCATGTCACTTGTACCGATGTAGCTGGAACTTTTGGATACCTCGCACCTGAGTATTTTATGCACGGTAAAGTGACTGATAAAATTGATGTATATGCTTTTGGTGTTGTACTCCTTGAGCTTCTCTCAAATAGGAAGCCCATTAACAATGAATGTCCAAAGGGCCAGGAGAGCCTTGTTATGTGGGCAACACCAATATTGAAAGGTGGGAAGTTTCCTCAGTTGTTTGATCCAAACCTAGGCATTGAATATGATGATGGCCAGATGAAGAGAATGGTTTTGGCCGCTAGTCTTTGCATTAGGCGGGAACCTAGACTGCGGCCTCAAATCAACCTGATATTGAAACTTCTTCGTGGTGATGAAGAGGTCACAAGGTGGGCAGAACAAGAAGTTAATTCACCCCAGGAACTTGATGGTTTTGAGGAGGAACCAATTCCAACTAACATACAGTCCCACCTGAACCTTGCTTTGATGGACTTGGAGGATGATACGATTTCTATAAGTAGCACTGAGCAGAGTGTCTCTTTGGAGGACTATTTGCAGGGAAGATGGAGTCGCTGTTCAAGTTTTGACTGA 2094 0.4489 MKLIGDGADGRKVLVGVKLDPSSRELLTWALVKVAEPGDIVIALHVLDSITEGTASLLSLVKTFDSVLAVYEGFCNLKQVGLRLKVCRGDSVRKVLVQEAKTFGVSTVILGTSKSHHTIRSSAWVAKYCAKKLPKCISVFSVDNGKIAFRREANGNCSDREKSPEGSSLSPKSLVVYTKKNMKTCESCALQEISGTEFERGFCDAVEKGDSLALVPFKKLEDGPCFSVVVDNSKRKPGWSVLRNVFHHKKHSPKSSTKNTYIFQRALRQPSFHSSAVVHPDHKQIGIEQIDDSPLDGVSGAIVPFGSSTIFTPPSISYESGNLPEELLILQEKYSSSCTLHSLQELVSATSNFAAENLVGKGGCSYVYRGCLPDGKELAVKILKPSENVVKEFVQEIEIITTLCHKSIISISGFCLEGNHLLLVYDFLSRGSLEENLHGNKADCSAFGWQERYKVAVGVAEALDYLHNGCAQPVIHRDVKSSNILLSDDFEPKLSDFGLASWGSSSSHVTCTDVAGTFGYLAPEYFMHGKVTDKIDVYAFGVVLLELLSNRKPINNECPKGQESLVMWATPILKGGKFPQLFDPNLGIEYDDGQMKRMVLAASLCIRREPRLRPQINLILKLLRGDEEVTRWAEQEVNSPQELDGFEEEPIPTNIQSHLNLALMDLEDDTISISSTEQSVSLEDYLQGRWSRCSSFD 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01829 697 Gene3D Phosphorylase Kinase; domain 1 323 427 - -
Vimu10g01829 697 Pfam Protein kinase domain 356 560 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g01829 697 Gene3D Transferase(Phosphotransferase) domain 1 428 643 - -
Vimu10g01829 697 SUPERFAMILY Protein kinase-like (PK-like) 334 630 IPR011009 -
Vimu10g01829 697 CDD USP_Like 12 137 - -
Vimu10g01829 697 FunFam Putative receptor-like serine/threonine-protein kinase 428 639 - -
Vimu10g01829 697 FunFam probable receptor-like serine/threonine-protein kinase At5g57670 10 143 - -
Vimu10g01829 697 ProSitePatterns Serine/Threonine protein kinases active-site signature. 474 486 IPR008271 GO:0004672|GO:0006468
Vimu10g01829 697 SMART serkin_6 353 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g01829 697 ProSiteProfiles Protein kinase domain profile. 353 629 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g01829 697 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 11 115 - -
Vimu10g01829 697 Gene3D HUPs 10 141 IPR014729 -
Vimu10g01829 697 Pfam Universal stress protein family 11 134 IPR006016 -
Vimu10g01829 697 FunFam probable receptor-like serine/threonine-protein kinase At5g57670 322 427 - -
Vimu10g01829 697 PANTHER OS08G0249100 PROTEIN 120 648 IPR046958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01829 Vimu-Chr10 25874388 25877444 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01829 336 624 Trihelix Transcription Factor Family AT1G68690 45.183 2.18e-75 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Vimu10g01829 Pkinase 2.3e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01829 - - gmx:100815722 1224.54