Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01815 ATGTCTGGGAAGGCCAAGAGGAGAGACGAAGCCGCTGCTTCTGACGCCGAATCTGAAGGCCACCATCCGCCAACAAAGATACCCAAGAAGGATTCCGACGACGATTCCGACGATATTGTCGTCTGCGAGATTTCTAAGAACAGGAGGGTCTCTGTGAGGAACTGGCAAGGCAGGGTTGTGGTTGACATTCGCGAGTTTTACCTCAAGGATGGCAAGAAATGTCCTGGCAAAAAAGGTTATATTATTTTGACGTTTTTGTTTGATTTTATTTTTCGAAATTATTTCGTTTTTTTATTTTTTTTATGTACTTTTCTTACATTGGTCTGTGAGTTTATTTTTAGTTCAGTGGGTGTGTTGTTTGAGGAATAG 369 0.4173 MSGKAKRRDEAAASDAESEGHHPPTKIPKKDSDDDSDDIVVCEISKNRRVSVRNWQGRVVVDIREFYLKDGKKCPGKKGYIILTFLFDFIFRNYFVFLFFLCTFLTLVCEFIFSSVGVLFEE 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01815 122 Gene3D Transcriptional Coactivator Pc4; Chain A 30 85 IPR009044 GO:0003677|GO:0006355
Vimu10g01815 122 PANTHER RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR 12 79 IPR045125 GO:0003713|GO:0060261
Vimu10g01815 122 MobiDBLite consensus disorder prediction 1 36 - -
Vimu10g01815 122 Pfam Transcriptional Coactivator p15 (PC4) 42 79 IPR003173 GO:0003677|GO:0006355
Vimu10g01815 122 SUPERFAMILY ssDNA-binding transcriptional regulator domain 41 90 IPR009044 GO:0003677|GO:0006355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Coactivator p15 Vimu10g01815 PC4 1.1e-15 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01815 K25815 - hbr:110666791 97.4413