Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01812 ATGGACTTTGACGAGTACGATTACTTGGAGAAGACAGTGGAGGAACAAGATGACCGCGACTCCAGCAGAAAGAAGAAAGAGACAGAAAGGAGCTACCGGAAGCGCGAGGAGATCGAGGAGGCCTCCGAGGAGAGGAAGAGCAAGAGGTCAAGGGGCGACGACGAGAATGGCTCGAAGAAGGATAAAGATCGCGAAGACCGCGACAGGGAGCGCCACAGAAGTAGCAGGGATAGAGATAGAGATAGAGACAGAGATGGCGAGAGAAGTAGCAGGGACAGGGACAGGGACAGAGACAGAGATAGGGAGAAGGAGAGAGACAAGGAGAGGGATCGGAGGGACAGAGACAAAGATAAGGAGAAGAGGGAGAAGGAGAGGGAAAGGGACAGAGATAGGGAAAGGGAGAGAGACAGAGATAGAGACCGAAGGGACAAAGAACGGGAAGAGAGGGAGAGGTCTCGGAGGAGCAGGAGTCGTTCTGAGCGAGAAAGAGAAAGAGAACGAGAACGGGATTTCGACACCAGAGATACCAGGAGATTCAGGGACAAGAAAGAGGCAGCAGAGCCTGAGGCAGATCCAGAAAGGGATCAGAGGACTGTTTTTGCATACCAGATGCCCTTAAAGGCGTCAGAGAGGGATGTATATGAATTCTTCTCAAAAGCTGGCAAGGTAAGGGATGTCCGTCTAATCATGGATAGGAACTCAAGACGATCTAAAGGAGTTGGGTATGCGCTCTCTTATAGCATAATTTATTCTTCATGTGCATGCACAATTGTGGTATTAGGTAGTGGCAGTGAGTGTGGAAATGATTTCTTCTCCAGGCCAGCCTTCCTTAGGTCCGAGGCCGATCGCTATTATGCAGGCCGATCGAGAGTGACCGAGCGGTTGGACGAATCAGAACAGGAGAGGACTGTTGGACCCAATGGGAGAGAACTGATGAAGCCGGTGACAGGATGGTATGAACCGAATGGCAAAGCACTGCAAGCTGCGGACCTAAGAGGACTGAAGGAACCGAAGAAAGCGAACGTGAAGAAGCAAGTGGAAGATGAGTGGCAAGCTGATTTGACGGGGGAGCACAGAGCAGAGTTGCAAAAAAAAAAAATTGAGACTTGGAAATTGGATTTCATTGAGAGAAAAATAATTAACGTTAGAAGAGATCTTGAGACTGGTGATGGGAGAACCAAGAACAACAAAACAGAGGAAAACTACTACACTCAGCATGAGTCTTTTAATCTTTACAAAGCTGATACCCATTGGACATCATGGCTGGTTCCTATGTTTGGGGTTGCTAATATTGTTGTTTCTGTTATTTGCATGTACATCAACAATTGTCTCAAAAATAACTTCCGTCCCCATGGTGGCTGCGTGGCTAAGTTCCTTGGAAGGTACATTGAATTTTATGATGCAATGTCAGTCCCAATGGCAATTGCTCTCTCTGGCCAACTTCTTCTGGGACAACCTGTAATGGTCAAGCCTTCTGAGGCCGAAAAGAACCTTGTCCAATCTAATACTACCAGTGGAGCTGCTGGGGTAGTAGGACCATATGGAGCTGTGGACAGGAAACTGTATGTGGGAAATCTTCACTTCAACATGACAGAGAGTCAATTAAGAGAGATTTTTGAGCCATTTGGTCCAGTGGAGCTTGTGCAATTGCCTCTTGACTTGGAGACAGGACATTGCAAGGGCTTTGGGTTTGTTCAATTTGCTCATCTTGAGCATGCCAAGGCTGCTCAGAGTTTAAATGGAAAGCTGGAAATTGCTGGCAGGACTATAAAGGTTTCATCTGTAACAGATCATGTTGGAAACCAAGATACAACTGCAAAATCTGCAGACTTTGATGATGATGAGGGTGGATTGGCTCTAAATGCCCAATCAAGAGCATTGCTTATGCAGAAACTGGACCGCTCTGGCATTGCAGCAAGCATTGGTCTGCCTGTTGGGAATGGGTCAGCTCCTGCTCAACAGGCTATGATGCCTATTGGTAATCCAGGTGTAATATCAGCACCAGCTGTCCCTACGCAAATTGTGCCTACCCCGGTGATTGAACCTGTTGGAAACCCCAGTGAGTGTCTACTGTTGAAGAATATGTTTGATCCCAACACTGAGACTGAGCCAGATTTTGATCTAGACATTAAAGAGGACGTGGAAGAAGAGTGTTCCAAATATGGACGGGTGAAACATATTTATGTTGACAAAAGAAGTGCAGGGTTTGTGTATTTGCAATTTGAAACAGTCGAAGCAGCTAGTGCTGCTCAACGTGCAATGCACACGAGGTGTTTTAACGTGCTGATTTTAACTGTCTTGAATGGAGGGTTTGTGTCTGTAAACTGGGCATTGTCTGATGAAGTTTAA 2349 0.467 MDFDEYDYLEKTVEEQDDRDSSRKKKETERSYRKREEIEEASEERKSKRSRGDDENGSKKDKDREDRDRERHRSSRDRDRDRDRDGERSSRDRDRDRDRDREKERDKERDRRDRDKDKEKREKERERDRDRERERDRDRDRRDKEREERERSRRSRSRSERERERERERDFDTRDTRRFRDKKEAAEPEADPERDQRTVFAYQMPLKASERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYALSYSIIYSSCACTIVVLGSGSECGNDFFSRPAFLRSEADRYYAGRSRVTERLDESEQERTVGPNGRELMKPVTGWYEPNGKALQAADLRGLKEPKKANVKKQVEDEWQADLTGEHRAELQKKKIETWKLDFIERKIINVRRDLETGDGRTKNNKTEENYYTQHESFNLYKADTHWTSWLVPMFGVANIVVSVICMYINNCLKNNFRPHGGCVAKFLGRYIEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTTSGAAGVVGPYGAVDRKLYVGNLHFNMTESQLREIFEPFGPVELVQLPLDLETGHCKGFGFVQFAHLEHAKAAQSLNGKLEIAGRTIKVSSVTDHVGNQDTTAKSADFDDDEGGLALNAQSRALLMQKLDRSGIAASIGLPVGNGSAPAQQAMMPIGNPGVISAPAVPTQIVPTPVIEPVGNPSECLLLKNMFDPNTETEPDFDLDIKEDVEEECSKYGRVKHIYVDKRSAGFVYLQFETVEAASAAQRAMHTRCFNVLILTVLNGGFVSVNWALSDEV 782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01812 782 MobiDBLite consensus disorder prediction 1 197 - -
Vimu10g01812 782 SUPERFAMILY RNA-binding domain, RBD 518 596 IPR035979 GO:0003676
Vimu10g01812 782 SUPERFAMILY RNA-binding domain, RBD 685 765 IPR035979 GO:0003676
Vimu10g01812 782 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 693 779 IPR000504 GO:0003723
Vimu10g01812 782 Gene3D - 684 768 IPR012677 -
Vimu10g01812 782 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 521 591 IPR000504 GO:0003723
Vimu10g01812 782 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 205 242 IPR000504 GO:0003723
Vimu10g01812 782 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 711 760 IPR000504 GO:0003723
Vimu10g01812 782 FunFam Splicing factor CC1-like 503 608 - -
Vimu10g01812 782 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 519 597 IPR000504 GO:0003723
Vimu10g01812 782 SUPERFAMILY RNA-binding domain, RBD 189 242 IPR035979 GO:0003676
Vimu10g01812 782 NCBIfam splicing factor, CC1-like family 462 761 IPR006509 GO:0003723|GO:0005634|GO:0006397
Vimu10g01812 782 Coils Coil 24 44 - -
Vimu10g01812 782 CDD RRM3_RBM39_like 687 760 - -
Vimu10g01812 782 MobiDBLite consensus disorder prediction 12 196 - -
Vimu10g01812 782 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 612 706 IPR029123 -
Vimu10g01812 782 Coils Coil 142 169 - -
Vimu10g01812 782 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 462 760 IPR006509 GO:0003723|GO:0005634|GO:0006397
Vimu10g01812 782 SMART rrm1_1 198 278 IPR000504 GO:0003723
Vimu10g01812 782 SMART rrm1_1 689 767 IPR000504 GO:0003723
Vimu10g01812 782 SMART rrm1_1 520 593 IPR000504 GO:0003723
Vimu10g01812 782 Gene3D - 122 244 IPR012677 -
Vimu10g01812 782 CDD RRM2_RBM23_RBM39 521 598 - -
Vimu10g01812 782 Gene3D - 515 611 IPR012677 -
Vimu10g01812 782 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 197 242 IPR000504 GO:0003723
Vimu10g01812 782 MobiDBLite consensus disorder prediction 295 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01812 Vimu-Chr10 25685971 25694240 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01812 491 592 Eukaryotic Initiation Factors Gene Family AT4G34110 34.951 6.79e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01812 K13091 - gmx:100802446 561.607
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04127 11 62920201 62929488 Vimu10g01812 10 25685971 25694240 ECH
Vimu10g01812 10 25685971 25694240 Vimu10g01812 10 25685971 25694240 ECH
Vimu11g04127 11 62920201 62929488 Vimu10g01812 10 25685971 25694240 PCT