Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01802 ATGGATTTGGACGATTTCCGATCCATATTGGACACCTCGGGCGTCGACGTCTGGATGTTCATAGATGCCGCAATCGCGGTCGCCTCCGCCGACTGCGCTGCCGAATTGAAGCGCCGCCGCGACTCCATCGTGGAAAGCCTCTACTCCGCCACGGCCGCGCCTCCGCAGTGCCGCAATTGTGGCGACGGCCACCGCCTCAGGCCCAACGGCCACCAAGTCGCAAAGCAGAACAGCCCTAGCCCTAGCCCCGAACGGCAACCTCAGCGACGCGCCGCCGCCGCAGCCAATTCCCCCGCGACGCCGCAGTCTCTGGAAAACGATGACGGCGGCGAGGAGTTGGATCCTTACGGTGGTTTGTTCGACGACGAACAGAAGAAGATTCTAGATATTAAAGAGCAACTCGAAGAGCCTGACCAGTCTGAAGATTCCTTGGTAGAGTTGCTGCAAAGCCTTGCGGACATGGATATTACATTCCAAGCTTTGAAGGAGACTGACATCGGGAGGCACGTGAATCGGTTACGGAAGCATCCTTCAAACGACGTTCGTCGATTGGTGAAGCTGCTTGTCAGGAAGTGGAAGGAAATTGTGGATGAGTGGGTGAAGTTGAATCCACAGGGAGGAAGCAACACTCTGATGGCTGATGGAGACTCGCCTGTGCAGAAAACCACCCAAAATGGGCATCATCATCAGGTTGAGATTCCTGATTTTGCATACTCGCCAAATCCACACAATGGGAGCTCAGGCTCTGACCGTAACAACTCAGAAGCAGAACATAAACCGAAGGTAATTCCGCGCAGTGAACCTCGGCCAAAACCCACGCTAGCACCGTCAGTTTCAACTCCTGCTTCCGCTTCTCAAAACAGACAAAGGCAGAGCAGTTTTGACGCGGAGAGGCTTGCTTCTGCCAGAAGGCGGCTTCAAGAGAACTACAAAGAGGCTGAAAATGCCAAAAGGCAAAGAACTATTCAGGTTATGGACATCAATGAGTTACCAAAGTCAAAACCCAAGAATGCCTTCTTTGGGAAGAACAAAGGTGGTGGTGGTTCTCAGGGAAGGCACTGGTGA 1065 0.5362 MDLDDFRSILDTSGVDVWMFIDAAIAVASADCAAELKRRRDSIVESLYSATAAPPQCRNCGDGHRLRPNGHQVAKQNSPSPSPERQPQRRAAAAANSPATPQSLENDDGGEELDPYGGLFDDEQKKILDIKEQLEEPDQSEDSLVELLQSLADMDITFQALKETDIGRHVNRLRKHPSNDVRRLVKLLVRKWKEIVDEWVKLNPQGGSNTLMADGDSPVQKTTQNGHHHQVEIPDFAYSPNPHNGSSGSDRNNSEAEHKPKVIPRSEPRPKPTLAPSVSTPASASQNRQRQSSFDAERLASARRRLQENYKEAENAKRQRTIQVMDINELPKSKPKNAFFGKNKGGGGSQGRHW 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01802 354 MobiDBLite consensus disorder prediction 276 296 - -
Vimu10g01802 354 CDD TFIIS_I 124 197 - -
Vimu10g01802 354 MobiDBLite consensus disorder prediction 297 319 - -
Vimu10g01802 354 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED 1 354 IPR044790 -
Vimu10g01802 354 Pfam TFIIS helical bundle-like domain 147 196 IPR017923 -
Vimu10g01802 354 ProSiteProfiles TFIIS N-terminal domain profile. 122 199 IPR017923 -
Vimu10g01802 354 MobiDBLite consensus disorder prediction 53 118 - -
Vimu10g01802 354 MobiDBLite consensus disorder prediction 203 354 - -
Vimu10g01802 354 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 121 208 IPR035441 -
Vimu10g01802 354 MobiDBLite consensus disorder prediction 71 85 - -
Vimu10g01802 354 MobiDBLite consensus disorder prediction 252 266 - -
Vimu10g01802 354 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 125 209 IPR035441 -
Vimu10g01802 354 SMART TFS2_5 127 198 IPR003617 GO:0005634
Vimu10g01802 354 MobiDBLite consensus disorder prediction 203 229 - -
Vimu10g01802 354 Coils Coil 296 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01802 Vimu-Chr10 25469120 25470995 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Vimu10g01802 Med26 3.6e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01802 - - gmx:100804034 560.451
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g01802 10 25469120 25470995 Vimu10g01802 10 25469120 25470995 ECH
Vimu10g01802 10 25469120 25470995 Vimu11g04136 11 63007834 63009967 ECH
Vimu11g04136 11 63007834 63009967 Vimu10g01802 10 25469120 25470995 PCT