Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01801 ATGAGACCTCTTAGCCAAACGAAGCAGTTGTTGGCGGTTACGGTTCAGAGGCAGAAGTTGTGGCACGAGTCTCGAGATGTGAAGGTCTCAGTGTGGTGGGATTTCGAGAACTGCCAGGTGCCGGCGGGGATTGACGTTTCGAATGTGGCGCCGGCGATCACGAAGGCTGTGAGAGCGAGTGGTATTAAGGGCCCTCTCCGAATCAACGCTTTCGGTGATATTCTGCTGCTGTCAAAATCCAACCGGCAAGCACTTTCTCACACCGGCATTCATTTTATCCACGTTCGAGGTGGAAGAAAGAACAGTGCCGATAGATTTATTCTCATGAATCTTAGGGACTGGATTTCTCAAAATCCTCCTCCTGCCCATCTCTTTTTGATATCTGCTGATGGAGACTTTGCTGGAATGTTACACAGGTTAAGAATGCATAATTACAATATATTACTTGCTAGCACAAGGAATGCTCCTGAGGTCCTCTGCAGTGCAGCAACAATAATATGGCAATGGTCTTCGTTAGTAAAGGGGGAACATTTTTCTGGAAAACATTTAAGCCATCCTCCTTATGGTTTGTTTGGTTCTTGGTATGGAAATTACAATGTGATTCCTGACAAACCATTCTCAGATGTTGAGAAGTCTGCATCTTCACAAAAAATAGACATATACAAACCTTCCTTAGATTTGCAAACTGTTCCAAAAGAAGTTATAACACATGTTTGCCATATATTTAGATCAAATCCAAACGGAATCTTAATTGGAGATCTTCATAGGCGGTTGAAGGAACGCAAAGTGGATTTTGGTAAAAAGTTTTATGGATATGGATCATTTACTCGCTTTCTAATATCAACAATGCATGTAAAGCTTGAGCCTTTGGGCTTTGGTAAATTTCGTGTATGTCTGATCCCCTCAAAATCCCCCAAACCTTTTGAGGGCAAAGATGTGGAATCGGTATCATCTTGTATAAAGATGGATGAGAAGGGATCTGTATCAACTCCAAAGCTAAATGGTGAGGATAGAAACAAGGTTAGAGAAGCAAATTGGAGACCCTTAACTGCCTCATCCCTTGAAAGGAGTATGGGTGATGATTCAAAATCATCACTTTTATCGGTTGAAAGCCCAGATACGTTACAGAAATTTTCAGTGCGTAATGGGAATGTTGTTGATATGACTACTGAACAACTGTCAGAGATTCAACCACAACACAGGGACAATCAACTTTCCAAAACTAAGCCGGATTCCTTAAAATTGAGTTCAAGTTCTAAAACATTATCTGGTTGTGACACTGTTGGCTCTGAGGATGCAATTTTTAGAATTCAAGAAAAATACACGACTTCAAGGAATCACTCTGCTGGAAATAATCAGACAGCAAAAGATGAGATTGTTTCTGCAATCTATGAATCTGCTAATGTTAGAGCAATGAACAAATACGAGAATTCAACTAGAAAAGAGGGTGGTGAAGTTTGTCACAGCCCATATTCTACAGAAGCTGATCACTCTCTGCTTCACAAAATAACTAGTGGAAGTGATAAAACTAATAGCAATGCTCCAACATTCTTTGTCTGGATTAGAAACTGGTGGAAATTTTGGAAAGGGAATGCAGAATCTGGTGTTTCAGCTGATTCTAACCCATCTGAACTCGTAGAGCAAACTGTTCAGGTTGTGAGTGATTTTAAAGAACCCAAGTTATCAGAGCTGGACCAACCTGAGTTGTTTTCTAGCGGTTCCTTTTGGGATGACATAGAAACTTTTGTTTTCACGCTCAAAGGATCATTTATTGTTTCCCAGTCGAAAAACAGGGAGGATATGGCATATAAATTGCTAAAGGATGGACCCCCAGTTTTAAGATCTCTCAATGAAGAAGATACTCTTCAATTGGTGGAGTTGTTAATATCAGAGAAAAAGTGGTTGGAGGAAATCCCGTCCCAAATATTTCCTTTCAGAGTAATTAAACCAGTTCAAGGGAACTCATTGACGGGCCAATCTCAGGGTGCAAATGGTTTGAGATCCCTCTTTCTGAGCAGATCGTCACAATCCAAGTTGCAAAATTCATCTGAACATACGAGTATTCCTAAATTCGGAGTTTCTGCAACTGATACTGAGACGAAATATAAGGGGATGTCTATAAAGGATATATTATAA 2136 0.404 MRPLSQTKQLLAVTVQRQKLWHESRDVKVSVWWDFENCQVPAGIDVSNVAPAITKAVRASGIKGPLRINAFGDILLLSKSNRQALSHTGIHFIHVRGGRKNSADRFILMNLRDWISQNPPPAHLFLISADGDFAGMLHRLRMHNYNILLASTRNAPEVLCSAATIIWQWSSLVKGEHFSGKHLSHPPYGLFGSWYGNYNVIPDKPFSDVEKSASSQKIDIYKPSLDLQTVPKEVITHVCHIFRSNPNGILIGDLHRRLKERKVDFGKKFYGYGSFTRFLISTMHVKLEPLGFGKFRVCLIPSKSPKPFEGKDVESVSSCIKMDEKGSVSTPKLNGEDRNKVREANWRPLTASSLERSMGDDSKSSLLSVESPDTLQKFSVRNGNVVDMTTEQLSEIQPQHRDNQLSKTKPDSLKLSSSSKTLSGCDTVGSEDAIFRIQEKYTTSRNHSAGNNQTAKDEIVSAIYESANVRAMNKYENSTRKEGGEVCHSPYSTEADHSLLHKITSGSDKTNSNAPTFFVWIRNWWKFWKGNAESGVSADSNPSELVEQTVQVVSDFKEPKLSELDQPELFSSGSFWDDIETFVFTLKGSFIVSQSKNREDMAYKLLKDGPPVLRSLNEEDTLQLVELLISEKKWLEEIPSQIFPFRVIKPVQGNSLTGQSQGANGLRSLFLSRSSQSKLQNSSEHTSIPKFGVSATDTETKYKGMSIKDIL 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01801 711 MobiDBLite consensus disorder prediction 326 369 - -
Vimu10g01801 711 PANTHER LIMKAIN B LKAP 13 681 IPR024768 GO:0005777|GO:0010468
Vimu10g01801 711 Gene3D - 21 170 - -
Vimu10g01801 711 MobiDBLite consensus disorder prediction 394 422 - -
Vimu10g01801 711 CDD PIN_limkain_b1_N_like 28 151 - -
Vimu10g01801 711 MobiDBLite consensus disorder prediction 350 369 - -
Vimu10g01801 711 Pfam NYN domain 28 163 IPR021139 GO:0004540
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01801 Vimu-Chr10 25450535 25453795 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01801 27 175 C2H2 Transcription Factor Family AT5G61190 42.953 3.55e-33 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01801 - - vun:114196141 1193.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g01801 10 25450535 25453795 Vimu10g01801 10 25450535 25453795 ECH