Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01800 ATGAAAATAAAGAGGTGGAAAATGGGTGAACTAAAACCATATTTGGCAATGTTAGTGGTGCAATTGATATATTCAGGGCTAACCCTGCTGTCCAAGGCTGTGTTTAACAGGGGAATGAATACCTTTGTGTTCATATTTTATAGACAGCTGATTGGTGCAATTATTTTGGTTCCTCTGGCCTTCATACTTGAGAAAAAAAGAGTAGTGTCAGTGCCACTTTCCTTTTCAACCTTGTGCAAGATTTTTGTGTCTTCATTTTTCGGAGTAACTTTGACCCTAAATATGCAAGCTATTGCCCTTGTTTACACGTCTGCCACTCTGACTGCTGCAATTGTCAATTCTCTCCCCGCATCTACGTTTTTCTTTGCTGTGCTGCTCAGAATGGAGAAGGTAAATATAAGGACAAAATGTGGAGTTACAAAGATAGCAAGCGTAGTTGTGTGCCTGGTTGGAGTAGCCACCCTTGCTTTTTACAAGGGACCACAGCTAAGGATTGCTCAATACTACAATCATAAGAGTCCACATCATGAGGATGATTTTTCATCCAGCAAAAGATGGGTATTAGGGTCTTTAGTCTTGTTCATAAGCGTCATCATATGGAGCCTTTGGCTTGTAATTCAGGCTCAAATTCTTAAAAGCTACCCTGCAAAGCTGAAGTTCACGAGCCTTCAGTGCCTATCAAGTTCAATCCAGTCATTTTGTATTGCTATAGCTTTTGAAAGAGATATTGAGCAGTGGAAGTTGGGTTGGGACATGAAACTGCTTGCAGTTGTTTACTGTGGGACACTAGTGACTGGAATCATCTACTACTTGCAAGCTTGGGCTATCCAAAAGAGAGGACCTGTTTTTACTGCCATGTGGAACCCGCTAAGTTTTCTCATTGCTACCACGGGTTCAATATTCCTGTTGGGCGAGCCCCTATTATTAGGAAGGTCAGACTTACAATGCTTCCGATACTATTATTTTTTTTTTTTAAATGGAAAATATTTTTTTTAA 996 0.4016 MKIKRWKMGELKPYLAMLVVQLIYSGLTLLSKAVFNRGMNTFVFIFYRQLIGAIILVPLAFILEKKRVVSVPLSFSTLCKIFVSSFFGVTLTLNMQAIALVYTSATLTAAIVNSLPASTFFFAVLLRMEKVNIRTKCGVTKIASVVVCLVGVATLAFYKGPQLRIAQYYNHKSPHHEDDFSSSKRWVLGSLVLFISVIIWSLWLVIQAQILKSYPAKLKFTSLQCLSSSIQSFCIAIAFERDIEQWKLGWDMKLLAVVYCGTLVTGIIYYLQAWAIQKRGPVFTAMWNPLSFLIATTGSIFLLGEPLLLGRSDLQCFRYYYFFFLNGKYFF 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01800 331 Pfam EamA-like transporter family 188 308 IPR000620 GO:0016020
Vimu10g01800 331 Pfam EamA-like transporter family 12 146 IPR000620 GO:0016020
Vimu10g01800 331 PANTHER WAT1-RELATED PROTEIN 12 310 IPR030184 GO:0016020|GO:0022857
Vimu10g01800 331 SUPERFAMILY Multidrug resistance efflux transporter EmrE 47 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01800 Vimu-Chr10 25435366 25436974 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01800 7 260 Nodulin-like Gene Family AT5G64700 50.958 6.57e-80 242
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01800 - - vum:124822595 577.785
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g01800 10 25435366 25436974 Vimu10g01800 10 25435366 25436974 ECH
Vimu10g01800 10 25435366 25436974 Vimu11g01352 11 15024684 15025150 ECH