Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01791 ATGCTGGAAGTCTCTGCTTCACCGGAAACTCCTCTTGCGAAGCCGGAGGGAGGCGCCGCAGCGGTCTCCGAGGGTCTCAAAGCGGAGGACGGCGAAGCCGGTGACCGGAATTCCGCCGCGAGTCGATGGCCTAAAGAGGAAACAATGGCTTTGCTCAAGATAAGGTCTGACATGGACGTTGCTTTCAGAGATACAAACCCCAAAGCCCCTCTCTGGGACCAAGTCTCAAAGAAATTAGCGGAGCTAGGTTATAACAGGAGTTCGAAGAAGTGCAAGGAGAAATTCGAGAACATTTACAAGTACCATAGGAGAACCAAGGAAGGTCGTTGTGGCAAATCCAACGGTAGCAAGAGTTATAGATTTTTCGAGCAATTGGAAGCTTTAGAAGGGCACCACTCACTTCCGACTCCCTCTGTAAGCGCCCCAGAAACAACAACGACGACGACGACGACGACCCACGTGCCCGACAACAACGCCAACGTCGATGTTATTTTAGATGCGGTTCCGTGTTCCGTGAGTGCGTACGTGGGGGAGCATTCTAGTTCGACGACTTCGTGCTCCGGGAAGGGGTTTAGAAAGAGGAAGCTGACGCAGTTTCTGGAGGGGTTGATGAGGGAAGTGATAGAGAAGCAGGAGACGCTGCAGAGGAAGTTCGTGGAGGTGTTGGAGAAGTGTGAGAAGGATCGAATGGCGAGGGAGGAAGCGTGGAAGAATGAGGAGCTGGCACTGATTAAGAAAGAGCGCGAGCTTCTGGCTCAGGAACGCTCCATCGCCGCGGCTAAAGATGAAGTGGTCCTTGCTTTTCTAAGAAAGTTCACCCAAGCTGAAGGCATGGTGCAGTTGCTGGAGAAAATTCAGGGTCAAAACAACGGGCACAGGGACATGCAACAACAAAGTGGGAATATCAATGCTGCGGCTAATGGAGGTGGTGGTGGTGGTGATAGTGATGTGAGTGATATGGATAAGCGAGAGTGTGGGAATAATCTGAGTGTTAGGAATTTCGTGCATATGAGTAGTTCGCGGTGGCCGAAGGATGAAGTGGAGGCTTTGATAAGGTTGAGGACTCAACTTGATGTGCAGTCTCAAGGGAACAATAATAGCAGTAATGGTGTGTCCAAGGGGCCACTTTGGGAGGACATATCTTCGGCCATGAAGGGCCTTGGCTACGAACGCAGTGCCAAGAGGTGCAAAGAGAAATGGGAGAACATAAACAAGTATTTCAAGAGGATGAAGGAGAAGAACAAGAGGAAACCTCAGGATTCCAAAACATGTCCCTATTATCACCACCTGGAGGTTTTGTACAGCAAGAAGCCTAAAAGGGTTGATGTAAATGATTTTGGGAAGGAGTTGAAGCCCGAGGAGCTGCTGTTGCATATCATGGAGAGTCAAAGTCAAGAAGAGAGACAAGCACAACAAGAACAGATACAGAGTCACTCATCATCCGAAGATGGGGAGAAAGATAATAGGGATCAAAATGGGTTTCAGAATGTGATGCTTGAAAATAGTCCTTCCAGAGCAATCATGAGTTAA 1530 0.4922 MLEVSASPETPLAKPEGGAAAVSEGLKAEDGEAGDRNSAASRWPKEETMALLKIRSDMDVAFRDTNPKAPLWDQVSKKLAELGYNRSSKKCKEKFENIYKYHRRTKEGRCGKSNGSKSYRFFEQLEALEGHHSLPTPSVSAPETTTTTTTTTHVPDNNANVDVILDAVPCSVSAYVGEHSSSTTSCSGKGFRKRKLTQFLEGLMREVIEKQETLQRKFVEVLEKCEKDRMAREEAWKNEELALIKKERELLAQERSIAAAKDEVVLAFLRKFTQAEGMVQLLEKIQGQNNGHRDMQQQSGNINAAANGGGGGGDSDVSDMDKRECGNNLSVRNFVHMSSSRWPKDEVEALIRLRTQLDVQSQGNNNSSNGVSKGPLWEDISSAMKGLGYERSAKRCKEKWENINKYFKRMKEKNKRKPQDSKTCPYYHHLEVLYSKKPKRVDVNDFGKELKPEELLLHIMESQSQEERQAQQEQIQSHSSSEDGEKDNRDQNGFQNVMLENSPSRAIMS 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01791 509 MobiDBLite consensus disorder prediction 132 157 - -
Vimu10g01791 509 CDD GT1 340 411 - -
Vimu10g01791 509 MobiDBLite consensus disorder prediction 491 509 - -
Vimu10g01791 509 SMART sant 338 406 IPR001005 -
Vimu10g01791 509 SMART sant 39 101 IPR001005 -
Vimu10g01791 509 MobiDBLite consensus disorder prediction 289 305 - -
Vimu10g01791 509 CDD GT1 41 106 - -
Vimu10g01791 509 MobiDBLite consensus disorder prediction 1 44 - -
Vimu10g01791 509 MobiDBLite consensus disorder prediction 462 509 - -
Vimu10g01791 509 Coils Coil 243 263 - -
Vimu10g01791 509 ProSiteProfiles Myb-like domain profile. 35 99 IPR001005 -
Vimu10g01791 509 PANTHER FI21293P1 24 488 - -
Vimu10g01791 509 MobiDBLite consensus disorder prediction 289 323 - -
Vimu10g01791 509 FunFam Trihelix transcription factor GT-2 43 104 - -
Vimu10g01791 509 Gene3D - 342 409 - -
Vimu10g01791 509 Gene3D - 43 104 - -
Vimu10g01791 509 FunFam Trihelix transcription factor GT-2 342 409 - -
Vimu10g01791 509 MobiDBLite consensus disorder prediction 462 478 - -
Vimu10g01791 509 MobiDBLite consensus disorder prediction 137 157 - -
Vimu10g01791 509 MobiDBLite consensus disorder prediction 28 44 - -
Vimu10g01791 509 ProSiteProfiles Myb-like domain profile. 340 404 IPR001005 -
Vimu10g01791 509 Pfam Myb/SANT-like DNA-binding domain 340 431 IPR044822 -
Vimu10g01791 509 Pfam Myb/SANT-like DNA-binding domain 41 128 IPR044822 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01791 Vimu-Chr10 25263377 25265101 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01791 32 439 Trihelix Transcription Factor Family AT1G76880 42.702 9.51e-109 334
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vimu10g01791 Myb_DNA-bind_4 6.9e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01791 - - pvu:PHAVU_009G147500g 795.808
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g01791 10 25263377 25265101 Vimu10g01791 10 25263377 25265101 ECH