Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01788 ATGTATTCTTCTGCTACTTTCTTTCCTTTACTCCTCCATGACTTTCAGAACTTCCACTCAAGAAGGTTGCTACTTCACTCCCCACTCAACCAATCAGCCAAGCCCCCAGCAACCCCCCACGATTCCGCAGAAACATATCTAGGAGATGGAAATTTCGATGCAAATGTTGTGATGGTACTCTCAGTCCTACTCTGTGCACTCATCTGCTCCTTGGGTTTGAACTCCATCATCAGGTGTGCACTAAGGTGTTCCAATTTCGTAGTGAGTGACTCGGTGGCAACCAACAGCCCTCCAGCGAGAGTTGCCAACACAGGAGTCAAGAAGAAAGCCCTCAAGACTTTCCCCACAGTGACTTACTCGGCTGAGCTGAACCTCCCGAGTTTAGACTCAGAGTGTGTGATATGTTTGTCAGAGTTCACAAGTGGTGAAAAGGTTCGCATTTTGCCAAAGTGCAACCACGGATTCCACGTACGCTGCATTGACATGTGGCTTAGTTCACACTCTTCATGCCCCAAATGCAGACACTGCCTAATCGAGACTTGCCAAAAGATTGTTGGCTGCACTCAGCAAGCTAGCTCCTCTCAACAACCCGTCTTGCAGGTGCCAGAAACCATTCTCACCATTACGCCACTTGACCCAGAAGGTTTGGTGCGTAACTATAGGGAACTTTAG 672 0.4836 MYSSATFFPLLLHDFQNFHSRRLLLHSPLNQSAKPPATPHDSAETYLGDGNFDANVVMVLSVLLCALICSLGLNSIIRCALRCSNFVVSDSVATNSPPARVANTGVKKKALKTFPTVTYSAELNLPSLDSECVICLSEFTSGEKVRILPKCNHGFHVRCIDMWLSSHSSCPKCRHCLIETCQKIVGCTQQASSSQQPVLQVPETILTITPLDPEGLVRNYREL 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01788 223 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 93 178 IPR013083 -
Vimu10g01788 223 FunFam RING-H2 finger protein ATL73 91 179 - -
Vimu10g01788 223 SUPERFAMILY RING/U-box 110 179 - -
Vimu10g01788 223 CDD RING-H2_EL5-like 131 174 - -
Vimu10g01788 223 SMART ring_2 132 173 IPR001841 -
Vimu10g01788 223 Pfam Ring finger domain 131 174 IPR001841 -
Vimu10g01788 223 PANTHER RING-H2 FINGER PROTEIN ATL78 15 216 IPR044602 GO:0016567|GO:0016740
Vimu10g01788 223 ProSiteProfiles Zinc finger RING-type profile. 132 174 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01788 Vimu-Chr10 25233854 25235807 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01788 22 178 C3H Transcription Factor Family AT3G10910 47.239 1.28e-44 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01788 K19040 - gmx:100807227 373.629
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g01788 10 25233854 25235807 Vimu10g01788 10 25233854 25235807 ECH
Vimu7g03205 7 27119813 27121513 Vimu10g01788 10 25233854 25235807 ECH
Vimu11g04148 11 63091694 63092927 Vimu10g01788 10 25233854 25235807 PCT