Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01787 ATGGAATGCGAAGGGAAATTCAGAGAGAAATTGGTGAAGGTGGTGGGAGTGGGAAAACTCTGTTATCTTCTGAAATCGAAAATCGGAGAGGGTTCATACTCCTTAGTGTGGAGAGCGGAGCAGAGACACACCGGCGATGACGTGGCGGTGAAGCAGGTCTTCCTCTCCAAACTCAACCCTCGCCTCAAGGCTTGTTTGGATTACGAGATCAACTTCTTGTCCTCTGTTGACCATCCCAATATTATTCATCTTCTTCACTTCTTCCAGGATGATGGATGTCTGTACCTTGTCCTTCAGTTTTGTGCTGGAGGCAGCCTAGCTTCTTATATTCGAAGCCATGGAAGAGTTCAACAACAAACTGCTAGAAAATTCATGCACCAGCTTGGCTCTGGTCTCCGAGTATTGCACTCTCGTGGCATCATTCACAGAGACTTGAAACCGGAGAACATTTTGCTATCAAGCCATGAGGGTGATGCAAAGCTAAAGATAGCTGATTTTGGTCTCTCAAGGACTGTGCGCCCAGGTGAATATGCGGAGACAGTTTGTGGTTCTCCGTTGTACATGGCTCCAGAAGTTCTTCAGTTCCAGAGATATGATGACAAGGCAGACATGTGGAGTGTTGGAGCTATTCTTTTTGAGCTTCTAAATGGATACCCACCTTTTAATGGCAAAAATAGTGTTCAGGTGCTGAAAAACATCAGATCCTGCAACTATCTTCCATTTTCTCAACTTACTCTTTCAGGACTGGATCCGGACTGTCTTGATATTTGTTCAAAGCTACTACACTTAAATCCAGTGGAACGCCTATCTGTTGATGAATTTTATTGGCATAGTTTTCTACAAAGAAAAGTGAGGAGAACATGA 864 0.4421 MECEGKFREKLVKVVGVGKLCYLLKSKIGEGSYSLVWRAEQRHTGDDVAVKQVFLSKLNPRLKACLDYEINFLSSVDHPNIIHLLHFFQDDGCLYLVLQFCAGGSLASYIRSHGRVQQQTARKFMHQLGSGLRVLHSRGIIHRDLKPENILLSSHEGDAKLKIADFGLSRTVRPGEYAETVCGSPLYMAPEVLQFQRYDDKADMWSVGAILFELLNGYPPFNGKNSVQVLKNIRSCNYLPFSQLTLSGLDPDCLDICSKLLHLNPVERLSVDEFYWHSFLQRKVRRT 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01787 287 Pfam Protein kinase domain 24 280 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g01787 287 ProSiteProfiles Protein kinase domain profile. 22 280 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g01787 287 SUPERFAMILY Protein kinase-like (PK-like) 22 282 IPR011009 -
Vimu10g01787 287 ProSitePatterns Protein kinases ATP-binding region signature. 28 51 IPR017441 GO:0005524
Vimu10g01787 287 PANTHER SERINE/THREONINE-PROTEIN KINASE UNC-51-RELATED 21 281 IPR045269 GO:0004674|GO:0006914
Vimu10g01787 287 Gene3D Transferase(Phosphotransferase) domain 1 19 287 - -
Vimu10g01787 287 ProSitePatterns Serine/Threonine protein kinases active-site signature. 140 152 IPR008271 GO:0004672|GO:0006468
Vimu10g01787 287 SMART serkin_6 22 280 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g01787 287 FunFam Maternal embryonic leucine zipper kinase 19 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01787 Vimu-Chr10 25160019 25162299 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01787 22 274 CBL-interacting serine-threonine protein kinases AT2G30360 37.066 2.05e-50 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Group-Pl-3 Vimu10g01787 Pkinase 2.6e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01787 - - lja:Lj1g3v1289070.2 456.447