Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01785 ATGCCGCCGGCGAAGAAGGGAAAAGCAAAGGCCGAGCCTAGGGTAACGCCGCCGCCGGAGAAACCTAACGACTTTCCGTCTTGTATTCGCTGCGTGCCTCCTTCCTCCGTCGCCGTAACCATCCACGCCAAACCTGGTTCCAAATCTGCATCCGTAACCGATATCAGCGATGAAGCGGTGGGAGTGCAAATTGACGCACCTGCCAGGGATGGCGAAGCAAATGCAGCTCTTCTCGATTTCTTCAGCTCTATGAGTTTGGCAGGAACAGAAAGCTCAGAGGAGGGGGCAGGCCTTCTAGAGCCTCCTGATCCCAATATTGTTGAAATCGATCCTACTAATCGCTACACTAGGTATAAAGAGGTTATTGGCCAAGGAGCTTTCAAGACTGTGTATCCTTTGATCGGTCTAAGAGGGCATGATTGGGTAGTTCACATAAGTTACAAGGCATTTGATGAAATTAATGGACTTGAAGTTGCATGGAGCCAAATTCATATTGATGAGGTATTACAGTCACCTGGTGGCCCAGATAGGCTGTACTCAGAAGTGCATCTCTTGAAGTCAGTTAAGCACGATAACATCTTGACTTTCCATAATTCTTGGATTGATGATAAGCACAGGACTATGAACTTGATTACTGAGTTATTCACCTCAGGGAACCTCAGACAGTACAGCAAGAAACACAGGAAGGTTGACATGAAGGCTGTTAAAGGATGGGCAAGGCAAATTTTAAATGGTTTAAATTATCTTCATAGTCACAACCCACCTATTATGCATAGGGACCTGAAGTGCGATAATATATTCATCAATGGTCACCGAGGAGAAGTTAAAATTGGAGATCTAGGGTTGGCAACTCTAATAAAACAAACTAATGCCAGGAGTGTAATTGGAACCCCGGAGTTCATGGCACCTGAACTGTATGATGAACATTATAATGAATTAGTGGACATATATTCTTTTGGGATGTGCATGCTTGAGTTGGTTACGTCTGAATATCCTTACAGTGAATGTAGAAACTCAGCTCAGATATACAAGAAAGTTTCATCTGGTATTAAGCCTGTTGCTCTTTCCAAACTCAAAAATCAAGAAGTAAAAGCATTTATTGAGAAATGTCTTGTCCCAGCGTCTCAAAGACTGACAGCAAAGGAGCTTTTGATGGACAATTTTCTGCAAGTGACTGGTTCATTGAAGAATCGTCGTCTACCATTACCAGATATCGTTCTCCCTAAATATGGAGCCTATGAAAATCGTTGTCTTATGTCAGAAGGTCCTGCTAGCACGCGTATTAGATCCATTTCAATGGATCTTGGTGATGCCACCGAGCAACCACTCACCACTTTACTTTATAATTCTGTTGATTCTCCTGATGATGTTTTGCCTTCTCCATGTGTTGAGATAAGAAGGTTAAAGGAAGGTGACATTTTTTTTCTAAAAGGTGAACAGAATGATCAAAAGTCTGTGTCATTAGTTCTCCGCATAGCAGATCAAAGTGGGCGGGCAAGAAATATCCATTTCATATTCTACATCAACAGTGATACTGCCATTTCAGTTTCAAGTGAAATGGTTGAGCAACTTGAACTGGCTGAGCACAATGTTAAATTCATAGCAGAGTTGATCGATCTATTATTGACCACGTTGCTTCCTGATTGGAAACCTTGTGTACCAATTGATCATTTAGTTGCTTGTAGTAGTAAATCATCTCATCCAAGTCAACAAACACGAAGCTCAAGAGATTCCATCCAAATTGTGTCTGGAGGTGGTCCAGGTCTCCCAATCTCACGTAGAAGATCAACAGAGAAGGAGAACAAAGATAATGTCATTTCTGACAAGGTTTTATCAAATACAAGCATTAGTCTTCAAGGAGATGCAAAGATAGACGACTCTTGTTCTGAGACATCACAAACTGGTGCAACATTTGACTTCAACGAAAAGCATTTTTCTACAGTTTCATTCATGTCTGCTAAATCAGGATTTACAGACTTTGACTTGCACAGGGTTAGTAGTCAAACCTCACTTGTATCTGAATTCGAGGCTTCGTCTGAGTATAGGAATTTTCCACGTGTGGAAAGCTATGGTACCATGAAATTCTTTAATTACCCTATGAATGCTCCCCCATCCTTCAATGAAGCTGAGGATGAGTTGAGAATAGAGTTAGAGATGATTGAACAACAATATCAAGAAGCAATTAGAGATTTATCAAAAAGAAGATATCAGGCCATCACTGAGGCTAGAAGGAGGGTATCACAGAAATTTCCAAACTTTAAATAA 2265 0.4132 MPPAKKGKAKAEPRVTPPPEKPNDFPSCIRCVPPSSVAVTIHAKPGSKSASVTDISDEAVGVQIDAPARDGEANAALLDFFSSMSLAGTESSEEGAGLLEPPDPNIVEIDPTNRYTRYKEVIGQGAFKTVYPLIGLRGHDWVVHISYKAFDEINGLEVAWSQIHIDEVLQSPGGPDRLYSEVHLLKSVKHDNILTFHNSWIDDKHRTMNLITELFTSGNLRQYSKKHRKVDMKAVKGWARQILNGLNYLHSHNPPIMHRDLKCDNIFINGHRGEVKIGDLGLATLIKQTNARSVIGTPEFMAPELYDEHYNELVDIYSFGMCMLELVTSEYPYSECRNSAQIYKKVSSGIKPVALSKLKNQEVKAFIEKCLVPASQRLTAKELLMDNFLQVTGSLKNRRLPLPDIVLPKYGAYENRCLMSEGPASTRIRSISMDLGDATEQPLTTLLYNSVDSPDDVLPSPCVEIRRLKEGDIFFLKGEQNDQKSVSLVLRIADQSGRARNIHFIFYINSDTAISVSSEMVEQLELAEHNVKFIAELIDLLLTTLLPDWKPCVPIDHLVACSSKSSHPSQQTRSSRDSIQIVSGGGPGLPISRRRSTEKENKDNVISDKVLSNTSISLQGDAKIDDSCSETSQTGATFDFNEKHFSTVSFMSAKSGFTDFDLHRVSSQTSLVSEFEASSEYRNFPRVESYGTMKFFNYPMNAPPSFNEAEDELRIELEMIEQQYQEAIRDLSKRRYQAITEARRRVSQKFPNFK 754
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01785 754 Coils Coil 706 730 - -
Vimu10g01785 754 Pfam Uncharacterised ACR, YggU family COG1872 37 83 IPR003746 -
Vimu10g01785 754 MobiDBLite consensus disorder prediction 564 581 - -
Vimu10g01785 754 SMART serkin_6 116 389 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g01785 754 Gene3D Transferase(Phosphotransferase) domain 1 215 395 - -
Vimu10g01785 754 FunFam probable serine/threonine-protein kinase WNK9 215 394 - -
Vimu10g01785 754 FunFam Probable serine/threonine-protein kinase WNK1 101 213 - -
Vimu10g01785 754 MobiDBLite consensus disorder prediction 1 26 - -
Vimu10g01785 754 Gene3D - 484 556 - -
Vimu10g01785 754 ProSitePatterns Serine/Threonine protein kinases active-site signature. 256 268 IPR008271 GO:0004672|GO:0006468
Vimu10g01785 754 Gene3D - 30 91 IPR036591 -
Vimu10g01785 754 CDD STKc_WNK 114 389 - -
Vimu10g01785 754 SUPERFAMILY Protein kinase-like (PK-like) 118 390 IPR011009 -
Vimu10g01785 754 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 103 641 - -
Vimu10g01785 754 ProSiteProfiles Protein kinase domain profile. 116 389 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g01785 754 Gene3D Phosphorylase Kinase; domain 1 102 213 - -
Vimu10g01785 754 SUPERFAMILY YggU-like 28 83 IPR036591 -
Vimu10g01785 754 MobiDBLite consensus disorder prediction 564 603 - -
Vimu10g01785 754 SMART DUF167_2 33 147 IPR003746 -
Vimu10g01785 754 Pfam Protein kinase domain 147 389 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01785 Vimu-Chr10 25149354 25154878 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01785 232 598 MAP Kinase Kinase Kinase AT1G49160 62.670 6.41e-162 473
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Vimu10g01785 Pkinase 7.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01785 K08867 - gmx:121175054 982.245
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g01785 10 25149354 25154878 Vimu10g01785 10 25149354 25154878 ECH
Vimu11g04156 11 63146037 63146480 Vimu10g01785 10 25149354 25154878 PCT