Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01782 ATGAGAGGTTTTGGGTTGAAGGAAGAGAGTGGTGCTATTATGTTTTGCTGTAATAAGGAACCCCTATGGCGCTCCAAGTGGGCACCTATGTCACCCTTAGGTCTTAACACTTTCGGGGAGATAATAGTTGGGGGATTACAGCAAAGCGTGAAGGTGAATGTGGAGTGGTTGTTGCAGTTGCAGACTATGGAGAACAGTAACATCTTGTTTACCGCTTCCACTCTTCAATCTCGAGGTGACAACACTTTTCTTCTTCCGCCATTCTCTCTGTGTCTTGAATCCGCTTGGTTCACTGCACTCGGAGCACTTCTTTTGTTTGACCTTGGACTTGGTGTTGTGGCCAACATTGCAATAGGGTCGGGTTTCCAACATGCCAACAAGTGTTGTCATTGGCTGTTTTTTGAATTTCTGAGAGGTTCCTCGTACTTGGTCCCTGTTTGTGGTGGTGTCGCAGAAGAAGCAGGGGAAGGGTTAGAGGTGACATTTTCTCTTCGAGATTTTGATGTGTTTTTTGACTCAGTGGGTTGTTTCTCACCAACCCAAGGGTCTGCTCTGACAGAAGAAGAGTCGGGTTATGAGATTTGGGCGAATGAGCCTGTGAGCGTGAAGGAAAGGAGGGGAAAGTTTTTGCAGGGGATGGGATGGGAAAAAGGTTCTTCCAAGGTTTGTGAAGAGAATAATATGATGAATTCTGATAGCTCATCAGTGAGATTTGGAGTGGAGAGGACCAGCGATAGTGGGACAGTTTCGAATACTTGTAGTTGTATTTTGCCTTATGATCAGGTTTCTGAGGAGTTGGTTCTGTCGGGAAGGGAAACAACTTCTGAGGCACAAGGGTTGTTTGAAGATCAGAAAGGAGGCCCCATAGATAAACCAGATGCAAGTTTAGAAGGGAAGATTTATGAGGTTTCTTTTACAGATCAAGAAGTTAGACATAGAAAAGCTGAGGCTCGAGAGGAAGAGAAGAAAAGTTGGTGGAAGCACTTTGTAAGCAACAAAAAAGGAGGTTGGGGGAAAGTCAGTTCAAAATTGAATTCAGGGCCAAATAAAACTCGTAGAATAAAAGTAAAGCATAATAAGAAGAGGTGGATGGAGTTCAGTGCACTGTATATTGGGCAAGAGATTAGAGCTCACGAAGGCCTGATATGGACTATGAAGTTTAGTCCCAATGGCCAATATCTGGCTAGTGGAGGTGAAGATGGTGTTATACGCATATGGCGTGTGACATCACTAAATACATCTAGTATTTGCTTCAATGCAGAAGACTGTGCTGTTAGAAAAGTGAAACATGGCTCCTCTGGTTCTCAGCAGAAACAATCAAGCCAATCCTTCGTTGTTCTTCCTAACAAGATTTTGAAAGTCGAGGAATCACCATTGCATGAATTTTATGGTCATACCAGCGATGTCTTGGATTTGGCTTGGTCCAATTCAGATACTCTCCTCTCTTCTTCTTCGGATAAAACTGTACGCTTGTGGAAAATTGGTTGTAATGAATGTCGGAGAGTTTTCCGTCACAAAGACTATGTGACTTGCATTCAATTCAACCCCGTTGATGAAAATTTCTTCATCAGTGGTTGCATAGATGGCAAAGTCCGAATATGGGGTATCCATGAAGAGCGAGTTGTTGACTGGGCAGACATACGAGATGTGATAACTGCTATAAGCTACCGACCAGATGGACAATCGGTTCCCTCACAGGCACTTGCCGCTTTTATGTTGCCTCAGCTTGATGCTCAAATGCGTGTCAATGGAAAGAAGAGAACATCTGGCAACAAGATAACAGGCATTCAGTTTTCTCAGAAAAACCATCAGAGAGTTATGATTACATCTGAAGATTCCAAAGTTAGGATATTGGAAGGCGTTGAACTTGTTCACACATATAAAGCTCTTCCAAGGTCTGGAAGTCAGATGTCTGGTTCATTTACCTCTGGTGAAGAGCATATAATTTCAGTAGGAGGGGACTCTCGAGTGTACATGTGGAACTTCAATGACTTGGGAAAAACTTCTTCCAAAAGTACAAAATCCAAGTATTCCTGTGAGTACTTTGGCTCTAAAGGGGTTACTATTGCAATACCTTGGTCTAGCGTGACTACAGAAGAAAGAGGTTCTGGCAATAATTTTGCCCACTATTCTTCAGAAATGCAACCCCAACTAGAGGCTGCTCATGGTGTTAGGGAATCAGAACGTTTTTCTTTTGGAAGTTGGTTCTCCATAGATGGTACATGCCGGGGTTCTGTGACATGGCCCGAAGAGAAGCTTCCTAGTTGGGAGTTACCTCTTGCAGAAGTTGAATTTGATCACCAGAAGCAATGTATCAGAGATCCTTCCCATGAAAAATACGTATCAGAAACATGGGGACTATCCATTGTGGCAGCAGGTTGTGATGGAACCATCAAGACATTCCACAACTTTGGACTCCCAATTAGGCTTTAG 2433 0.4332 MRGFGLKEESGAIMFCCNKEPLWRSKWAPMSPLGLNTFGEIIVGGLQQSVKVNVEWLLQLQTMENSNILFTASTLQSRGDNTFLLPPFSLCLESAWFTALGALLLFDLGLGVVANIAIGSGFQHANKCCHWLFFEFLRGSSYLVPVCGGVAEEAGEGLEVTFSLRDFDVFFDSVGCFSPTQGSALTEEESGYEIWANEPVSVKERRGKFLQGMGWEKGSSKVCEENNMMNSDSSSVRFGVERTSDSGTVSNTCSCILPYDQVSEELVLSGRETTSEAQGLFEDQKGGPIDKPDASLEGKIYEVSFTDQEVRHRKAEAREEEKKSWWKHFVSNKKGGWGKVSSKLNSGPNKTRRIKVKHNKKRWMEFSALYIGQEIRAHEGLIWTMKFSPNGQYLASGGEDGVIRIWRVTSLNTSSICFNAEDCAVRKVKHGSSGSQQKQSSQSFVVLPNKILKVEESPLHEFYGHTSDVLDLAWSNSDTLLSSSSDKTVRLWKIGCNECRRVFRHKDYVTCIQFNPVDENFFISGCIDGKVRIWGIHEERVVDWADIRDVITAISYRPDGQSVPSQALAAFMLPQLDAQMRVNGKKRTSGNKITGIQFSQKNHQRVMITSEDSKVRILEGVELVHTYKALPRSGSQMSGSFTSGEEHIISVGGDSRVYMWNFNDLGKTSSKSTKSKYSCEYFGSKGVTIAIPWSSVTTEERGSGNNFAHYSSEMQPQLEAAHGVRESERFSFGSWFSIDGTCRGSVTWPEEKLPSWELPLAEVEFDHQKQCIRDPSHEKYVSETWGLSIVAAGCDGTIKTFHNFGLPIRL 810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01782 810 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 502 534 - -
Vimu10g01782 810 ProSiteProfiles Trp-Asp (WD) repeats profile. 375 416 IPR001680 GO:0005515
Vimu10g01782 810 ProSiteProfiles Trp-Asp (WD) repeats profile. 502 544 IPR001680 GO:0005515
Vimu10g01782 810 Pfam WD domain, G-beta repeat 457 493 IPR001680 GO:0005515
Vimu10g01782 810 Pfam WD domain, G-beta repeat 498 534 IPR001680 GO:0005515
Vimu10g01782 810 Pfam WD domain, G-beta repeat 374 406 IPR001680 GO:0005515
Vimu10g01782 810 PRINTS G protein beta WD-40 repeat signature 522 536 IPR020472 -
Vimu10g01782 810 PRINTS G protein beta WD-40 repeat signature 394 408 IPR020472 -
Vimu10g01782 810 PRINTS G protein beta WD-40 repeat signature 480 494 IPR020472 -
Vimu10g01782 810 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 375 410 - -
Vimu10g01782 810 ProSiteProfiles Trp-Asp (WD) repeats profile. 462 494 IPR001680 GO:0005515
Vimu10g01782 810 PANTHER WD REPEAT DOMAIN 44 313 807 IPR040324 -
Vimu10g01782 810 SUPERFAMILY WD40 repeat-like 373 664 IPR036322 GO:0005515
Vimu10g01782 810 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 462 494 - -
Vimu10g01782 810 Gene3D - 365 694 IPR015943 GO:0005515
Vimu10g01782 810 SMART WD40_4 368 407 IPR001680 GO:0005515
Vimu10g01782 810 SMART WD40_4 455 493 IPR001680 GO:0005515
Vimu10g01782 810 SMART WD40_4 620 661 IPR001680 GO:0005515
Vimu10g01782 810 SMART WD40_4 496 535 IPR001680 GO:0005515
Vimu10g01782 810 SMART WD40_4 583 619 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01782 Vimu-Chr10 24993347 24997908 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01782 K20241 - gmx:100801576 993.801
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g01782 10 24993347 24997908 Vimu10g01782 10 24993347 24997908 ECH
Vimu11g04162 11 63219085 63222353 Vimu10g01782 10 24993347 24997908 PCT