Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01778 TTGCCACAGTTCTCACAACCATTCTCCTCTCCCTCTCTAACTCAGGAAAACGGTTTCCTCGAAAATATAAATTCCAATTCTGCACTTTTGGTTTCCAAAATTTCTCAATCCGCCATGCCTCCAGCCACCTCTTCGCCTACGGCTCAGAGGCACGTTGGCTTCAGCCGTCGCACGCAGGCGCCGTTCCAGCTCAACGACTCCTCGCCTCAGCTCCATGATGACTCACCGCCGGCGAAGAAGTACAGGCTGATGTCAGACATTATGGCGCGCGCCCAGTACGCGGTGGTGGAAAGAGAGACTTACAGTGACCTGTTGTGCGAGCAATGCGGTTCCGGTGAGCTGTCGGACGAGCTGCTTCTCTGCGACAAATGCGACAGAGGCTTCCACATGAAATGCGTGAGGCCGATTGTCGTGAGAATTCCGATTGGATCGTGGCTTTGTCCTAAGTGTCAGGGAGGGAAGAGAGTGCGGTCTTTCTCGCAAAAGAGGATAATTGATTTCTTCGGGATTCGAAGGAGTTATTTTTATGCTGATGACAAGAGTTCTTCTCAGGATGCCAAGAAGCGTAGGAAACGTTCAAGACCTCTGGTATTACACAAGAAAAAAAGGAGATTGTTACCATTTGTTCCTACAAAAGATCCTGCTCAGAGATTGAAACAGATGGGTTCCCTTGCTTCTGCTTTAACAGCATTAAATATAGAATTCTGTGATCACCTCACATACTTGCCTGGAATGGCTCCTAGATCTGCGAATCGAGCCGAACTGGAAAACGGTGACATGCAGATTCTTTCCAAGGAAGACTTGGAGACCGTGGAACACTGTATTGCTATGTCTAAACGAGGCGAATTCCCTCCTTTTATGGTTGTTTATGATTCGTGTCAAGGCTATACTGTTGAGGCTGATGACCTAATCAAGGATATGACAATTGTTGCTGAATACACTGGCGATGTGGATTACCTTCACAACCGGGAACGTGATGATTGTGACAGCATGATGACCCTTCTTCTTGGAAGAGAAAGTTGTCAAAGTCTTGTTATCTGTGCTGATAAACGTGGAAACATCGCTCGCTTTATAAGTGGCATAAACAATCATACACAGGAAGGTAGGAAGAAACGAAACTGCAAATGTGTGAGATACAATGTTGATGGTGAATGCAGGGTCTTTTTGGTTGCTACTCGTGACATTTATAAAGGAGAAAGACTTTATTATGATTACAATGGTTACGAGTATCATTACCCGACTCATCATTTTGTCTAA 1257 0.4574 MPQFSQPFSSPSLTQENGFLENINSNSALLVSKISQSAMPPATSSPTAQRHVGFSRRTQAPFQLNDSSPQLHDDSPPAKKYRLMSDIMARAQYAVVERETYSDLLCEQCGSGELSDELLLCDKCDRGFHMKCVRPIVVRIPIGSWLCPKCQGGKRVRSFSQKRIIDFFGIRRSYFYADDKSSSQDAKKRRKRSRPLVLHKKKRRLLPFVPTKDPAQRLKQMGSLASALTALNIEFCDHLTYLPGMAPRSANRAELENGDMQILSKEDLETVEHCIAMSKRGEFPPFMVVYDSCQGYTVEADDLIKDMTIVAEYTGDVDYLHNRERDDCDSMMTLLLGRESCQSLVICADKRGNIARFISGINNHTQEGRKKRNCKCVRYNVDGECRVFLVATRDIYKGERLYYDYNGYEYHYPTHHFV 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01778 418 SUPERFAMILY SET domain 278 407 IPR046341 -
Vimu10g01778 418 SMART PHD_3 105 151 IPR001965 -
Vimu10g01778 418 SUPERFAMILY FYVE/PHD zinc finger 96 155 IPR011011 -
Vimu10g01778 418 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 54 164 IPR013083 -
Vimu10g01778 418 ProSiteProfiles SET domain profile. 284 406 IPR001214 GO:0005515
Vimu10g01778 418 Pfam SET domain 324 406 IPR001214 GO:0005515
Vimu10g01778 418 FunFam Histone-lysine N-methyltransferase ATXR5 189 418 - -
Vimu10g01778 418 Gene3D SET domain 189 418 IPR046341 -
Vimu10g01778 418 ProSiteProfiles Zinc finger PHD-type profile. 103 153 IPR019787 -
Vimu10g01778 418 ProSitePatterns Zinc finger PHD-type signature. 106 150 IPR019786 -
Vimu10g01778 418 CDD PHD_RSF1 105 150 - -
Vimu10g01778 418 Pfam PHD-finger 106 151 IPR019787 -
Vimu10g01778 418 CDD SET_ATXR5_6-like 281 418 - -
Vimu10g01778 418 PANTHER N-LYSINE METHYLTRANSFERASE KMT5A 183 416 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01778 Vimu-Chr10 24926155 24929907 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01778 101 172 C2H2 Transcription Factor Family AT3G01460 36.111 2.59e-10 60.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vimu10g01778 SET 3e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01778 K24406 - gmx:100785817 662.914
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g01778 10 24926155 24929907 Vimu10g01778 10 24926155 24929907 ECH