Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01773 ATGAGGAGAAGGAATGTGGTGTTCTTGGGGGATGGCATGGGTAAGACGGTGATCACGGGATCTGCTAACGTGGGCCAGCTCGGTGTCACCACCTACAGCTCTGCCACCGTGGGGGTTGCGGGGGATGGATTTATGGCAAAGGATCTCACGATTCAGAACACGGCTGGTGCTGATGCTCACCAAGCAGTGGCCTTCAGATCAGACAGTGATCTTTCTGTCATTGAGAACTGTGAATTCATAGGCAACCAGGATACTCTCTATGCTCATTCCCTGCGCCAATTTTATAAATCTTGCCGCATACAAGGCAACGTTGACTTCATCTTTGGGAACTCGGCAGCAATCTTCCAAGACTGTGAAATCCTAGTCCGGCCTCGCCAAGGCAGACCAGAAAAGGGTGAGAACAATGCTGTTACTGCTCAAGGTAGGACAGACCCTGCTCAGTCAACAGGATTTGTTTTCCAGAACTGTACGGTTAATGGTACGGAGGAATACATGGCATTGTATTATAGCAAACCTACAGCTCACATAAACTATCTGGGGAGGCCTTGGAAGGAGTATTCTAGAACAGTTTTCATCCATACATTCTTGGAAGCCCTTATCACACCAGAGGGATGGATGCCATGGACTGGGGATTTTGCTCTGAAAACGCTTTATTATGGGGAATTTGAGAACTCAGGACCCGGTTCTAATCTGAGTAAGAGGGTGCCTTGGAGTAACCAGGTCCCATCGGAGCACGAGGAGGGCCGCGGAGTGATGAATATGAGGAGGGACCATTTTAGTAACCGGGGAATCTTTTCTCTTCCACTTAGGAACAGCCAGTACAATGAAGATGTCCAAAGAATTCAAATGCCATGTTGTTGTGGTAGCAGATACTGA 876 0.484 MRRRNVVFLGDGMGKTVITGSANVGQLGVTTYSSATVGVAGDGFMAKDLTIQNTAGADAHQAVAFRSDSDLSVIENCEFIGNQDTLYAHSLRQFYKSCRIQGNVDFIFGNSAAIFQDCEILVRPRQGRPEKGENNAVTAQGRTDPAQSTGFVFQNCTVNGTEEYMALYYSKPTAHINYLGRPWKEYSRTVFIHTFLEALITPEGWMPWTGDFALKTLYYGEFENSGPGSNLSKRVPWSNQVPSEHEEGRGVMNMRRDHFSNRGIFSLPLRNSQYNEDVQRIQMPCCCGSRY 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01773 291 Gene3D - 1 258 IPR012334 -
Vimu10g01773 291 FunFam Pectinesterase 4 1 257 - -
Vimu10g01773 291 PANTHER PECTINESTERASE 4 239 - -
Vimu10g01773 291 MobiDBLite consensus disorder prediction 225 246 - -
Vimu10g01773 291 Pfam Pectinesterase 3 240 IPR000070 GO:0030599|GO:0042545
Vimu10g01773 291 SUPERFAMILY Pectin lyase-like 4 240 IPR011050 -
Vimu10g01773 291 MobiDBLite consensus disorder prediction 225 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01773 Vimu-Chr10 24852002 24853588 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01773 1 254 Carbohydrate Esterase AT5G09760 74.409 3.20e-143 413
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01773 - - gmx:100802102 467.233