Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01769 ATGTTCAAGCCTTGGCCCTACAGTGGGCGCCAAAATGTTTCAGTACTGACTCGCTCGCTCTTTCCGGATCTTAATAGCTCGCACTCCTTCAGTTCTGGCCGTACCTACAAAGGCACTCTGACGCTCAAGTTAGGCGTCTATCGTAGAAGGATCTCAATTCTCAGCAAAGTGATGCTCAGAATGAGAGAATTGGTGACAGGGTTTCCCATAATATTTCTAGCTGCTGTTTGTTTTGTTAATTATCTACCTTTGGATTATGCCAATTACTTGGAGTCAAAGCAGGAAGATGCAGCTCCCAGATATTTTGTTCTCCAAGAGGGTAGAGATTATTCTCTTAAGAGTGGCAGATCTAATGAAGCTTGTACTATTTTTGCAAAGGGAAGGTGTAGAATGGGAGCATCATGCAAGTTTGTACATGAAAATTTTGATGAACATGGTAAAGTTTTTGTGGATGAATTAAATAGAGAGAGGGATATTGATAGAAGACACAGAAAAAGTTCTTTTGCGCAGGGAGGACATGGACCAAACCGAGGTAGTGATACTCTTTGCAAATTTTTTGCCAATGGAAATTGTCGTAATGGTAAATATTGTAGGTTTTCTCATGATAGGCAAGCATGTAGGAGCCCTAATAGACGATTAAGAGATGATAGGCGGGCAAGCAATCCAGGGGGAGATCACCATAGGATGGATAGACCGAAATTGAGTGATTCAGATAGTCCTAATAGAAGGCCAAGGGATGATAGGTGGGGTTCAGATGGTAACAAGGTTGATGCAGCTAAAGTTTGGGACAGTCCAAAGTGGAATGATACAGTTGTTGTATCTGATTCAGGAAAGCTGGTTGAGGGAAAAAGTGAAAATGTCGGTGCCACAGAGCCAGGATTCACTTCGTTACCTACAAGGTATGGATGGAGTCATAGTTTGGATAAGAGCAGAGTGCATCGTGAGCAGCCTTTTTCAAGTGATAAGGAAGTTAACAGTTGGTCAATAGGTACAGACATTTGGTTGGGTGATACGAAAATGTCTCCTGATTGGCATTACAGGGTGGGATCTTCCAACACCATTGAAGAAAAGCATGAAAAAAATAAGCGTGTGGTAAAAGAAGGTGGTACATATTTAGCCACCTCTGAACATGACAGAATACAAATTGCTGCAGGACAAGGCACTAATCAGAATGCAGAGAGTTTGAATCCTTTGCATTCTTCTGGTTTGCAAGCAGTTGGACAAAGTCAGGTCCCAATTCCTATTCTACCTTCAAAGGGAGGAATTGTCCATGGTATGCCAGACCAGGAAGTCTCCATTGAGAAAAAATACACTGCTGAACCAAATATTGGCTTATCACAAATTAGTTCAAGAAATCTTCCTCCCACTGAGAATCTGGTAGGCCAAGAAAAGCTTGCTCAGCTTACCAATCTCTCAGCCTCTCTGGCCCATATCCTTGGGACAGGGCAACAGCTACCGCAATTATATTCTGCTTTAAATTCTCACTATGCCAAGGACACATCCTCCCTAGCAAAAGCTGAGGTGTCTGCTGTGCCTATTTCCAATACTATCCACTCCGATCCTGCTGTGCCTGTTTCGAATACATTCATCCACCCTGATCCTGCTGTTGGACTCCTGAAGCAGTATGATCCAATGTGTGATGGTGTTGAGCCAAAGAGTGCTGCTACAAGTGGGTTACTCCCATCCATTCCTCCAAGTAAAAGAGTTGCAGAAGATGTTCTGGAAATTCAAGCACAGTTGTTCAATACGTCAAGACAAAACAATGGTGATTCTTCCAAGGCTGCTGGCCCAGAAGAACTAGTCAAGAGTTATCCTCTAGTCCAGTCGCAATCAGGTCAAAACACTGAAGTTGGGAAGGATGATAACAAGGAAGTGATACCCGAGGAAAGACATAAATCTCGAGATGATCCTAAAAGTACCATAGAGAATGATCCTTTGGAAAACATCGAGCAAACTGGAGGTCCTGATGAGGCCAAGAAAACAAAGGATTTAGTGTTGGTTTACACATTCCCATTATGTTTTGAAGGATTTCAGTCTTCTTATAGGACTCCTAATAAGGATGGCCCTATAATCAACATGAAACAATTATAG 2091 0.4247 MFKPWPYSGRQNVSVLTRSLFPDLNSSHSFSSGRTYKGTLTLKLGVYRRRISILSKVMLRMRELVTGFPIIFLAAVCFVNYLPLDYANYLESKQEDAAPRYFVLQEGRDYSLKSGRSNEACTIFAKGRCRMGASCKFVHENFDEHGKVFVDELNRERDIDRRHRKSSFAQGGHGPNRGSDTLCKFFANGNCRNGKYCRFSHDRQACRSPNRRLRDDRRASNPGGDHHRMDRPKLSDSDSPNRRPRDDRWGSDGNKVDAAKVWDSPKWNDTVVVSDSGKLVEGKSENVGATEPGFTSLPTRYGWSHSLDKSRVHREQPFSSDKEVNSWSIGTDIWLGDTKMSPDWHYRVGSSNTIEEKHEKNKRVVKEGGTYLATSEHDRIQIAAGQGTNQNAESLNPLHSSGLQAVGQSQVPIPILPSKGGIVHGMPDQEVSIEKKYTAEPNIGLSQISSRNLPPTENLVGQEKLAQLTNLSASLAHILGTGQQLPQLYSALNSHYAKDTSSLAKAEVSAVPISNTIHSDPAVPVSNTFIHPDPAVGLLKQYDPMCDGVEPKSAATSGLLPSIPPSKRVAEDVLEIQAQLFNTSRQNNGDSSKAAGPEELVKSYPLVQSQSGQNTEVGKDDNKEVIPEERHKSRDDPKSTIENDPLENIEQTGGPDEAKKTKDLVLVYTFPLCFEGFQSSYRTPNKDGPIINMKQL 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01769 696 MobiDBLite consensus disorder prediction 605 660 - -
Vimu10g01769 696 SMART c3hfinal6 116 141 IPR000571 GO:0046872
Vimu10g01769 696 SMART c3hfinal6 177 203 IPR000571 GO:0046872
Vimu10g01769 696 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 106 665 - -
Vimu10g01769 696 MobiDBLite consensus disorder prediction 208 254 - -
Vimu10g01769 696 Gene3D - 115 209 - -
Vimu10g01769 696 MobiDBLite consensus disorder prediction 617 643 - -
Vimu10g01769 696 SUPERFAMILY CCCH zinc finger 180 202 IPR036855 GO:0046872
Vimu10g01769 696 ProSiteProfiles Zinc finger C3H1-type profile. 115 142 IPR000571 GO:0046872
Vimu10g01769 696 ProSiteProfiles Zinc finger C3H1-type profile. 177 204 IPR000571 GO:0046872
Vimu10g01769 696 MobiDBLite consensus disorder prediction 208 262 - -
Vimu10g01769 696 Pfam CCCH-type zinc finger 182 202 IPR041367 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01769 Vimu-Chr10 24817518 24822399 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vimu10g01769 zf-CCCH_4 1.6e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01769 - K22909 gmx:100783856 811.601
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g01769 10 24817518 24822399 Vimu10g01769 10 24817518 24822399 ECH