Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01766 ATGGATACCAACCTCAACACTAGATTCACAAACGTTAACACCACTTACAATCACGAGACCATGACCACAGATCAAAACAACATCATCCTCCACGATCATCACCAATTTCCAATGGGTGTTGGAATTTGGTCCAATCACCACCACCACCCTTTTCACACACAACCCTCTTCCTCCTCAACAACTAATTTCCTAACCGATGTCTTGGGAATCCAGTTTGAAGAAGATGAAGAGGAAGAGCTCGGAGCGATGAAGGAGATGATGTACCAGATGGCAGCTATGCAACCGGTCGACATAGACCCTGCCACCGTCAGAAAACCCAAGAGGCGAAACGTCCGCATAAGTGATGACCCTCAGAGTGTGGCTGCACGTCATAGAAGAGAGAAGATCAGTGAGAAAATCCGTATCCTTCAAAGACTTGTCCCTGGTGGAACCAAAATGGACACTGCTTCCATGCTTGACGAAGCCATTCACTATGTCAAGTTCTTGAAGCGACAAATCAGGTTGCTTCAATCAACACCACAAATTCACTCCGTTAACGCCACTGCTCCCAACTCCTATTGCCCTTTTGCACCAACTACATTGCACGCTTCCACCTCCGTCAACCTGCCTCTTGGAATCCAATTCAACGCCGGAATTCATGACCATGCCGCTCATTCCCTCCACCTTCAACATTCATCGGGTAATTACTCATTGCTCATTTACTGA 705 0.4695 MDTNLNTRFTNVNTTYNHETMTTDQNNIILHDHHQFPMGVGIWSNHHHHPFHTQPSSSSTTNFLTDVLGIQFEEDEEEELGAMKEMMYQMAAMQPVDIDPATVRKPKRRNVRISDDPQSVAARHRREKISEKIRILQRLVPGGTKMDTASMLDEAIHYVKFLKRQIRLLQSTPQIHSVNATAPNSYCPFAPTTLHASTSVNLPLGIQFNAGIHDHAAHSLHLQHSSGNYSLLIY 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01766 234 CDD bHLH_AtIND_like 114 171 - -
Vimu10g01766 234 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 118 175 IPR036638 GO:0046983
Vimu10g01766 234 Gene3D - 116 181 IPR036638 GO:0046983
Vimu10g01766 234 Pfam Helix-loop-helix DNA-binding domain 123 162 IPR011598 GO:0046983
Vimu10g01766 234 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 35 203 IPR045843 GO:0003700|GO:0006355
Vimu10g01766 234 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 113 162 IPR011598 GO:0046983
Vimu10g01766 234 FunFam BHLH transcription factor 116 180 - -
Vimu10g01766 234 SMART finulus 119 168 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01766 Vimu-Chr10 24743615 24744319 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01766 82 187 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00120 72.642 5.34e-48 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vimu10g01766 HLH 1.8e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01766 - - var:108331264 402.905
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g01766 10 24743615 24744319 Vimu10g01766 10 24743615 24744319 ECH
Vimu11g04172 11 63318693 63320428 Vimu10g01766 10 24743615 24744319 PCT