Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01752 ATGGCCCGAAGAAATTCGACTCCAGGGTTTCGGTTCCGTCCCACCGACGTTGAGTTGATTGAGTTTTTTCTGAAGAGGAAGGTTCGGGGCAAGAAAATTCCTAGCGGAGTAATCGCTGAGCTTGACTTGTACAAGTATGCTCCGTGGGATCTACCAGATAAATCTGTGCTTCAGAGTGGGGATTTGGAGTGGTACTTCTTTTGCCCGCAGGGGAAGAAGTATTTGAGTGGAGGGAGGTTGAATCGGTCGACGGAGGCTGGGTACTGGAAGACTACTGGGAAGGATAGAGCGGTTGAACACAAGAATCGAGTTGTGGGGATGATTAAAACTCTGGTTTTTCACACCGGTAAGGCCCCTAAGGGAAATCGGACTGATTGGGTTATGCATGAATTCAGACTCCAGGACAAGGAGATGGTTGACGAAGGCATTTCGCAGGATTCCTATGTAATTTGTAGGATATTCCAAAAGGAAGGTCCTGGCCCTAGGAATGGTGCACAATATGGTAAACCATATGATGAAAAGGACTGGGATACAGATGAGGAAATTGACTCTGTACAATCTGATCGAGTTGCTTCTGTGTCTACACCTGTTCCCATACAACCCAGTGGAAGTGATATTTCAATTGTAAAAGACATCCATCCCTCTACAAGTGGATGTGCCGGATTGACCTCTGAATTATGTGTATCAAAATTGATGCCTTCTTGCTCAGCACATCATGCGATTGTTAACAATCAAGTAGTCTCTGTTTCATGTGTATCGGAATTGATGCCCTCCTCCTGCTCAGCACTATCTTCTCCTAACTGTGCGTTGGATTCTGTATCACATCTATCAGCGGTTCCTTTTGCTCCAAACTATGATGTTGACTCTTTATCATGTGTATCAAAATTGATGTCCTCTGGCTTGCCACTTGCTTTGGCTCCAAACAATCTAGTTGACACTTCATCATCAGTACCAGAATTGATGCCCTCTTGCACGGCACGTCCTTCATCTTCATCTCCAAACCATCAAGATGATGATAACATTTTATATTTGCTAGATTATTTCAAAGAAGATGATGACACAAAGGCTGTGAATGAAAATAATGGAATTGAGAAGGCTGATCCTGATCAGGCGAACAATGCTGAATGCGCACCATGTTTGGATCAAAATGTGATTTTTGAGAACTTAGGAGACCTTGACAGCTTGGTTGGATTGGGTGAAGGAACCTCTGGCCAGAAAACTGGACTTTCTACAAGCGATATGTTTTATATAGGTGATGATATGTTCAGGTCTTGGGAATCCCAAGACTTTTTGGAGTTGATGGACCTAGCGGGGCCACAGCCCTGGCAAAGATAA 1335 0.4419 MARRNSTPGFRFRPTDVELIEFFLKRKVRGKKIPSGVIAELDLYKYAPWDLPDKSVLQSGDLEWYFFCPQGKKYLSGGRLNRSTEAGYWKTTGKDRAVEHKNRVVGMIKTLVFHTGKAPKGNRTDWVMHEFRLQDKEMVDEGISQDSYVICRIFQKEGPGPRNGAQYGKPYDEKDWDTDEEIDSVQSDRVASVSTPVPIQPSGSDISIVKDIHPSTSGCAGLTSELCVSKLMPSCSAHHAIVNNQVVSVSCVSELMPSSCSALSSPNCALDSVSHLSAVPFAPNYDVDSLSCVSKLMSSGLPLALAPNNLVDTSSSVPELMPSCTARPSSSSPNHQDDDNILYLLDYFKEDDDTKAVNENNGIEKADPDQANNAECAPCLDQNVIFENLGDLDSLVGLGEGTSGQKTGLSTSDMFYIGDDMFRSWESQDFLELMDLAGPQPWQR 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01752 444 Gene3D NAC domain 15 158 IPR036093 GO:0003677|GO:0006355
Vimu10g01752 444 ProSiteProfiles NAC domain profile. 6 156 IPR003441 GO:0003677|GO:0006355
Vimu10g01752 444 FunFam Nac domain-containing protein 86 15 159 - -
Vimu10g01752 444 Pfam No apical meristem (NAM) protein 8 133 IPR003441 GO:0003677|GO:0006355
Vimu10g01752 444 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 7 256 - -
Vimu10g01752 444 SUPERFAMILY NAC domain 5 156 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01752 Vimu-Chr10 24464171 24468489 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01752 1 271 NAC Transcription Factor Family AT5G64060 47.232 4.07e-84 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vimu10g01752 NAM 8.5e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01752 - - vun:114164401 738.799