Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01744 ATGCTGTTTCTTTATGCTAGAGGGCAAGGTGACGTGAAGTTCCATGTGAGGTCTAAAAGCCCAGGTCCTGGGTCAAGAGGGCCCACCAGCCCAACATCACCTCTTCATCCGAAGTTGCCTATTTTGAGCCTTGACTCTCCTACAGGCAGGCAAGAAGACGGAAGGGGTGAATGCCATCCGTTGCCTCTTCCACCGGGCTCTCCTACTAGCCCTTCTTCTTCTCTTTCCAGCGCTAGAGCAAATGGGGTGGCAGAACACACTACCGGTAACCTTTCAAAGTGGAAGAAGGGAAAGCTTCTAGGACGGGGAACATTTGGGCATGTTTACCTGGGATTCAATAGTAATAGTGGACAATTGTGTGCAATAAAGGAAGTCAGGGTTGTCTGTGATGACCAAACGTCAAAGGAGTGCCTCAAACAACTTAATCAGGAGATCAATTTGCTCAGTCAGCTTTCACATTCAAACATTGTTCAATACTATGGGAGTGATTTGGGAGAAGAAACACTCTCCGTTTATTTGGAATATGTCTCTGGTGGTTCTATTCACAAATTACTTCAGGAATATGGGGCCTTCAAAGAGCCTGTTATTCAAAATTATACCAGGCAAATTGTCTCTGGTCTTTGCTATCTTCATGGGAGAAATACAGTGCATAGGGATATAAAGGGGGCTAACATACTAGTTGATCCTAATGGTGAAATCAAGCTGGCAGACTTTGGAATGGCCAAACATATAAATTCTTCTTCCTCCATGCTTTCTTTCAAAGGGAGTCCATACTGGATGGCACCTGAGGTTGTAATGAATACAAATGGCTATAGCCTTCCTGTTGATATATGGAGCTTGGGATGCACAATTCTTGAAATGGCAACATCAAAGCCTCCCTGGAATCAATATGAAGGGGTAGCGGCAATATTTAAAATCGGTAACAGTAGAGATATGCCTGAAATCCCTGATCATCTCTCAAGCGATGCAAAGAATTTCATTCAGCTATGCTTACAAAGAGATCCATCAGCCCGTCCCACTGCCCAGCAGTTACTAGAGCATCCCTTTATTCTAGATCAACCAGCTACAAAAGCTACAAATGTCAGAATAACTAGGGATGCTTTCCCCTACATGTTTGATGGAAGTCGGACACCGCCGCCAGTTTTAGATCATTCCAATAGAACGAGTATAAATTCATTGGATGGAGAATATGGAACAAAGCCAGTTCCTGTTACTTCACGTGCAGTAAGGAGCCCAAGAGATAACACAAGGGTGATCACATCTTTACCAGTATCGCCCTGCTCAAGTCCATTGAGACAGTATGGGCCAGCCCACAAGAGCTGTTTTCTTTCTCCTCCTCATCCAACTTACACTTTGATGGGGCAAAATACCCTACCTTCATATCCAGTGAGATCAAATGCAACATTCACTCTTGATCCTTTTCATGAAAAATCATTTTACAAAGCCCACACACCGGGTGGATCCCCTAGAAGATTCATTTGA 1482 0.4406 MLFLYARGQGDVKFHVRSKSPGPGSRGPTSPTSPLHPKLPILSLDSPTGRQEDGRGECHPLPLPPGSPTSPSSSLSSARANGVAEHTTGNLSKWKKGKLLGRGTFGHVYLGFNSNSGQLCAIKEVRVVCDDQTSKECLKQLNQEINLLSQLSHSNIVQYYGSDLGEETLSVYLEYVSGGSIHKLLQEYGAFKEPVIQNYTRQIVSGLCYLHGRNTVHRDIKGANILVDPNGEIKLADFGMAKHINSSSSMLSFKGSPYWMAPEVVMNTNGYSLPVDIWSLGCTILEMATSKPPWNQYEGVAAIFKIGNSRDMPEIPDHLSSDAKNFIQLCLQRDPSARPTAQQLLEHPFILDQPATKATNVRITRDAFPYMFDGSRTPPPVLDHSNRTSINSLDGEYGTKPVPVTSRAVRSPRDNTRVITSLPVSPCSSPLRQYGPAHKSCFLSPPHPTYTLMGQNTLPSYPVRSNATFTLDPFHEKSFYKAHTPGGSPRRFI 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01744 493 CDD STKc_MEKK1_plant 93 350 - -
Vimu10g01744 493 SMART serkin_6 94 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g01744 493 MobiDBLite consensus disorder prediction 70 88 - -
Vimu10g01744 493 ProSiteProfiles Protein kinase domain profile. 94 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g01744 493 Gene3D Transferase(Phosphotransferase) domain 1 91 369 - -
Vimu10g01744 493 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 42 356 - -
Vimu10g01744 493 FunFam Mitogen-activated protein kinase kinase kinase 92 374 - -
Vimu10g01744 493 SUPERFAMILY Protein kinase-like (PK-like) 92 420 IPR011009 -
Vimu10g01744 493 ProSitePatterns Protein kinases ATP-binding region signature. 100 123 IPR017441 GO:0005524
Vimu10g01744 493 Pfam Protein kinase domain 95 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g01744 493 MobiDBLite consensus disorder prediction 389 412 - -
Vimu10g01744 493 MobiDBLite consensus disorder prediction 14 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01744 Vimu-Chr10 24325885 24330730 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01744 3 413 MAP Kinase Kinase Kinase AT1G53570 64.403 0.0 519
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Vimu10g01744 Pkinase 1.6e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01744 K04421 - gmx:100813122 896.345