Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01729 ATGAAGGTGAAGAAAGGGTTCTTGGCCGTTCAAGTCGGCTTAGAAGACGAGGACCAAGGTGGTTCCTCTTCTCAGAGATTCGTGATTCCCATCTCATACCTTTACCACCCTCTCTTCAAGCGTCTTCTCGACAAAGCTCGCGAGGTCTACGGCTACCACACCGATGGCCCCCTCAAGCTGCCCTGCTCCGTCGACGATTTTCTCCATCTCCGTTGGCGAATCGAAAAGGAGTCAACTTCCGATCAACACCACCATAACCATACCAACCATCGCCTTCCACACGCTTTGCACTTTCACTCCTGTTGA 306 0.5196 MKVKKGFLAVQVGLEDEDQGGSSSQRFVIPISYLYHPLFKRLLDKAREVYGYHTDGPLKLPCSVDDFLHLRWRIEKESTSDQHHHNHTNHRLPHALHFHSC 101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01729 101 Pfam Auxin responsive protein 3 73 IPR003676 GO:0009733
Vimu10g01729 101 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 3 70 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01729 Vimu-Chr10 23957391 23957696 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01729 3 86 Calmodulin-binding Proteins AT3G43120 41.667 7.95e-14 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01729 K14488 - gmx:100809305 196.823
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g01729 10 23957391 23957696 Vimu10g01729 10 23957391 23957696 ECH