Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01720 GGATGCAAGTTTTCACTCGAGGAAGAGAGGATTGTGATAGAGTTGCAGGCACAATTTGGGAACAGGTGGGCTAAGATTGCATCCTTTTTGTCAGGGAGAACAGACAATGATGTGAAAAATTTCTGGAGCAGTAGGCAAAAGAGGTTGGCCAGGATTCTACAGACATCGGGAACAACTTCCAAATCACAGAAAAATAAAACAAAAGTTCCTACCCTTCTCGATGTTCCAACTTTGGAGGCTCCAAAATTCAGTTCTTCATCAGAGGGAGAATCATCATCAAAGCCTCAGTCATACTCACTACCTTTGATTGAGAATTCTGAGGTTATCAAAATGGTATCTTTGCCAGATCTCATAAAGTCTGAGTTACCTAGTTCTGACCCAATCCATGTCGAACAAGGTTTTAACCCTTTTGAGAGCTATAACAGTAGTGAGCAGATTCAACAGATTTCCTTTCCTCAGATTCCTGAACTCCAAAATGATCTCACATTCCCAATGGGAAGCCAAGATGTCTTAGCCAGAATCGATGAGCCATATTTCGTTGACGACTATTGTGCTCTTGATGATGCATCTGAGTTTGGAATAGGTCTGCAGCACCCCATTGGATTCCCTTTCTTCGAGCCACCAGGAAGTTGCAGAATTGAGGCAAGGGATACCATTGATAAGTTCAAAAGCAGTGACAGCTTCTTCGATGACTTCCCTATGGACATGTTTGATCACATAGACCCACCTGCAAGCCCTTCTTACTTATGA 750 0.4267 GCKFSLEEERIVIELQAQFGNRWAKIASFLSGRTDNDVKNFWSSRQKRLARILQTSGTTSKSQKNKTKVPTLLDVPTLEAPKFSSSSEGESSSKPQSYSLPLIENSEVIKMVSLPDLIKSELPSSDPIHVEQGFNPFESYNSSEQIQQISFPQIPELQNDLTFPMGSQDVLARIDEPYFVDDYCALDDASEFGIGLQHPIGFPFFEPPGSCRIEARDTIDKFKSSDSFFDDFPMDMFDHIDPPASPSYL 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01720 249 ProSiteProfiles Myb-like domain profile. 1 46 IPR001005 -
Vimu10g01720 249 Pfam Myb-like DNA-binding domain 3 42 IPR001005 -
Vimu10g01720 249 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 50 IPR017930 -
Vimu10g01720 249 FunFam Transcription factor GAMYB 2 71 - -
Vimu10g01720 249 SMART sant 1 48 IPR001005 -
Vimu10g01720 249 CDD SANT 3 42 IPR001005 -
Vimu10g01720 249 PANTHER TRANSCRIPTION FACTOR DUO1 1 247 - -
Vimu10g01720 249 Gene3D - 3 71 - -
Vimu10g01720 249 SUPERFAMILY Homeodomain-like 3 53 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01720 Vimu-Chr10 23748170 23749397 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01720 1 246 MYB Transcription Factor Family AT3G60460 37.931 5.48e-36 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vimu10g01720 Myb_DNA-binding 1.7e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01720 K09422 - gmx:100805384 357.451