Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01719 ATGGACTTGAGCGAAGAAGTTAGGGCAGCGCATAAGCGAGAATTCACAGATTTCTTGGATCAAGATGTGGGAAAGGGCATTTACATGGACGAAATCAAAGCCCTAATCAACCACAAGCGTCACCGCCTCATCATCAACATCTCCGATCTCCATAACTTCCACGACTTGGGTAACAGGATAATCAGGACTCCAAGTGAGTACATTCAACCGCTCTGCGATGCGGTGACGGACGCTACTCGTGGTATTGATCCTAAGTATTTGAAGGAAGGGGAACAAGTGCTTGTGGGATTTGAAGGTTCCTTTGTTTCTCGCCGAGTCACGCCAAGGGAGCTTCTTTCTGAATTCATAGGTTCTCTTGTAAGGCCGAAGGTTGTTAAAAGTGTTCATTTCTGCCCCACCACGGGTAACTTCACTTCTCGCGAATATCGTGATATTACCTCTAATTTGGGTTTGCCCACAGGATCTGTTTATCCTACCAGGGATGAAAATGGCAACTTACTTGTGACTGAGTATGGATTGTGCAAATACAAAGATCATCAAACTCTTTCCATTCAAGAAGTTCCTGAGAATTCTGCTCCTGGTCAACTCCCAAGAACAGTGGATGTCATTGTAGAAGATGACCTTGTTGATTCTTGCAAGCCTGGAGATCGAGTGGCAATTGTGGGAGTATATAAGGCTCTTGCAGGGAAAAGTAAAGGCAGTGTGAATGGAGTATTCAGGACTGTGCTCATAGCCAACAATGTTTCTCTTCTCAACAAAGAGGCTAATGCACCAATCTACAGCCCCGAAGATCTCAAAAACATTAAAAAGATAGCTGAAAGAGATGATGCATTTGACCTGCTAAGTAATTCGCTTGCACCTTCTATATATGGGCATTCTTGGATAAAAAAAGCAGTGATTTTGTTGATGCTTAGTGGAGTTGAGAAGAACTTAAAGAATGGCACTCACTTGCGAGGTGACATTAACATGATGATGGTTGGTGACCCCTCTGTTGCCAAGTCTCAACTCTTGAGAGCAATTATGAACATTGCTCCCTTGGCCATATCAACTACAGGCAGGGGTTCTTCTGGGGTTGGTTTGACCGCCGCTGTTACTTCAGATCAAGAAACAGGGGAAAGAAGGCTAGAAGCTGGGGCAATGGTTCTTGCTGACAGAGGTGTTGTCTGCATTGATGAATTTGACAAGATGAATGATGAAGATCGTGTTGCTATACATGAAGTTATGGAGCAGCAGACTGTGACTATTGCTAAAGCTGGTATCCATGCATCACTAAATGCCCGATGCAGTGTGGTTGCCGCTGCAAATCCCATATATGGAACTTATGATCGTTCATTGACTCCAACTAAAAATATTGGACTTCCAGACTCCTTGCTTTCTCGATTTGATCTACTGTTTATTGTGTTAGATCAAATGGATCCTGACATTGATCGTCGAATTTCTGAGCATGTACTTCGTATGCATAGATTTCGTTCTGCTGTTGATGGAGGCGCGGCAACACTTAATGGGAGCTCAGGATATGGAAGAGAAGATGAAGCTGATACGGACTCGTCTATCTTTGTCAAATATAACAGAATGTTACATGGGAAGAAAACTGAAAGAGGTCGCAAACGTGATACTCTTACAATTAAGTTTCTTAAGAAATATATCCACTACGCTAAGCATAGGATTCAACCTGAACTGACTGATGAGGCGTCTGAGAACATTGTCACAGCCTATGCTGAGCTCAGAAATGCAAGCTCAAATGCAAAGACAGGAGGAACACTTCCCATAACTGCCAGAACCTTAGAAACCATCATACGTCTCTCAACAGCTCATGCCAAACTGAAATTGAGCAGAAAGGTTTCAAAGTCTGATGTTGAAGCTGCTTTAAAGGTTTTAAATTTTGCAATATATCACAAAGAACTTACAGAAATGGAGGAGCGAGAGCAAGAGAGGGAGAAAGAGCAAGACAGGAAGCGTAAGGCTGATCATAATGAAAATGATGGTCCTGATCGTGGTTCTAAAGATAGAAGGTGA 2016 0.4296 MDLSEEVRAAHKREFTDFLDQDVGKGIYMDEIKALINHKRHRLIINISDLHNFHDLGNRIIRTPSEYIQPLCDAVTDATRGIDPKYLKEGEQVLVGFEGSFVSRRVTPRELLSEFIGSLVRPKVVKSVHFCPTTGNFTSREYRDITSNLGLPTGSVYPTRDENGNLLVTEYGLCKYKDHQTLSIQEVPENSAPGQLPRTVDVIVEDDLVDSCKPGDRVAIVGVYKALAGKSKGSVNGVFRTVLIANNVSLLNKEANAPIYSPEDLKNIKKIAERDDAFDLLSNSLAPSIYGHSWIKKAVILLMLSGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDKMNDEDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMDPDIDRRISEHVLRMHRFRSAVDGGAATLNGSSGYGREDEADTDSSIFVKYNRMLHGKKTERGRKRDTLTIKFLKKYIHYAKHRIQPELTDEASENIVTAYAELRNASSNAKTGGTLPITARTLETIIRLSTAHAKLKLSRKVSKSDVEAALKVLNFAIYHKELTEMEEREQEREKEQDRKRKADHNENDGPDRGSKDRR 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01719 671 SMART mcm 104 631 IPR031327 GO:0003677|GO:0005524|GO:0032508
Vimu10g01719 671 SMART AAA_5 319 472 IPR003593 GO:0016887
Vimu10g01719 671 FunFam DNA helicase 123 177 - -
Vimu10g01719 671 Pfam MCM AAA-lid domain 544 627 IPR041562 -
Vimu10g01719 671 Coils Coil 631 660 - -
Vimu10g01719 671 ProSitePatterns MCM family signature. 386 394 IPR018525 GO:0003677|GO:0005524|GO:0006260
Vimu10g01719 671 Gene3D - 166 255 IPR012340 -
Vimu10g01719 671 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 8 653 IPR031327 GO:0003677|GO:0005524|GO:0032508
Vimu10g01719 671 Pfam MCM OB domain 118 226 IPR033762 -
Vimu10g01719 671 Gene3D - 259 652 IPR027417 -
Vimu10g01719 671 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 287 643 IPR027417 -
Vimu10g01719 671 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 618 633 IPR008046 GO:0003677|GO:0005524|GO:0006270|GO:0042555
Vimu10g01719 671 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 446 456 IPR008046 GO:0003677|GO:0005524|GO:0006270|GO:0042555
Vimu10g01719 671 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 195 207 IPR008046 GO:0003677|GO:0005524|GO:0006270|GO:0042555
Vimu10g01719 671 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 169 183 IPR008046 GO:0003677|GO:0005524|GO:0006270|GO:0042555
Vimu10g01719 671 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 479 489 IPR008046 GO:0003677|GO:0005524|GO:0006270|GO:0042555
Vimu10g01719 671 MobiDBLite consensus disorder prediction 636 671 - -
Vimu10g01719 671 Pfam MCM N-terminal domain 12 83 IPR027925 -
Vimu10g01719 671 SUPERFAMILY Nucleic acid-binding proteins 13 247 IPR012340 -
Vimu10g01719 671 ProSiteProfiles MCM family domain profile. 277 483 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vimu10g01719 671 FunFam DNA helicase 5 104 - -
Vimu10g01719 671 CDD MCM3 280 629 - -
Vimu10g01719 671 Gene3D - 3 99 - -
Vimu10g01719 671 PRINTS Mini-chromosome maintenance (MCM) protein family signature 457 465 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vimu10g01719 671 PRINTS Mini-chromosome maintenance (MCM) protein family signature 378 392 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vimu10g01719 671 PRINTS Mini-chromosome maintenance (MCM) protein family signature 318 333 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vimu10g01719 671 PRINTS Mini-chromosome maintenance (MCM) protein family signature 406 419 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vimu10g01719 671 PRINTS Mini-chromosome maintenance (MCM) protein family signature 430 442 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vimu10g01719 671 Pfam MCM P-loop domain 265 487 IPR001208 GO:0003677|GO:0005524|GO:0032508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01719 Vimu-Chr10 23743425 23747437 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01719 1 566 Core DNA Replication Machinery Family AT5G46280 78.966 0.0 931
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01719 K02541 - gmx:100811545 1226.08