Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01712 TTGAAGTCACATAGCAAAGCAGAGCCAACAACATTCACCAACAAAAGCAAACATTCACCGACAAAAACAACCACAGCAGCAACCAAAGAAGCTCTCAAATCAGAATATCGTTCAGTTAACGAAACAACACACAAGCGAGAAGACAAAAAGCGAATGAAGGGTGAATTAGAGTTGCCACCTGGATTCAGGTTTCACCCCACGGATCATGAATTGGTGAACCATTATCTTTGTAGGAAATGCGCTGGTCAACCAATTGCTGTTCCTATCATCAAAGAGGTCGATTTGTACAAGTTTGATCCATGGCAGCTTCCAGAAATCGGATTTTACGGCGAGAAAGAATGGTATTTTTTTTCTCCTCGGGATCGCAAATACCCCAACGGCTCTCGGCCGAATCGGGCCGCCGGAAGTGGGTATTGGAAGGCCACCGGCGCCGATAAACCGATCGGAAAGCCGAAGGCGCTTGGGATAAAGAAAGCCCTAGTTTTTTACTCGGGAAAAGCCTCCAAAGGAGAGAAAACCAATTGGATCATGCACGAATATCGACTGGCCAATGTTGACCGATCAACCTCCAAGAAAAATAACAACCTGAGACTTGACGATTGGGTGTTGTGTCGAATTTACAACAAGAAAGGGAAGATTGAGAAACACAACACGGGGGCACCGAAATTAGAGACTGGGGTGGTTTATAATTTCGAACATGAGACGAAGCCGGTGATTGAGAAGCTTGCGAATGAGCAATTGTTTATGGACAGTTCAGATTCGATGCACAGGTTGCAGAGTGAGTCGAGCGGTTTAGAGCAGGTGGTTTCGCCGGACGTGAGGTGGGAGAGAGAAGTGCAGAGCCAGCCGAAATGGAATGACATAGGCCTACAGCTTGAAAACGTGTTTGATTTTCAATACAATTACTTTGACAGCAATAACCTTTCGGTGGATGAACCTTTTGGGAGTGTTGAGTACCCCTTGCAGGACGTGCTCATGGAAGCCCTATTGATGTGA 996 0.4608 MKSHSKAEPTTFTNKSKHSPTKTTTAATKEALKSEYRSVNETTHKREDKKRMKGELELPPGFRFHPTDHELVNHYLCRKCAGQPIAVPIIKEVDLYKFDPWQLPEIGFYGEKEWYFFSPRDRKYPNGSRPNRAAGSGYWKATGADKPIGKPKALGIKKALVFYSGKASKGEKTNWIMHEYRLANVDRSTSKKNNNLRLDDWVLCRIYNKKGKIEKHNTGAPKLETGVVYNFEHETKPVIEKLANEQLFMDSSDSMHRLQSESSGLEQVVSPDVRWEREVQSQPKWNDIGLQLENVFDFQYNYFDSNNLSVDEPFGSVEYPLQDVLMEALLM 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01712 331 Pfam No apical meristem (NAM) protein 59 182 IPR003441 GO:0003677|GO:0006355
Vimu10g01712 331 MobiDBLite consensus disorder prediction 1 31 - -
Vimu10g01712 331 PANTHER NAC TRANSCRIPTION FACTOR 56 58 250 - -
Vimu10g01712 331 FunFam NAC transcription factor 67 213 - -
Vimu10g01712 331 ProSiteProfiles NAC domain profile. 58 209 IPR003441 GO:0003677|GO:0006355
Vimu10g01712 331 MobiDBLite consensus disorder prediction 34 60 - -
Vimu10g01712 331 Gene3D NAC domain 67 214 IPR036093 GO:0003677|GO:0006355
Vimu10g01712 331 MobiDBLite consensus disorder prediction 1 60 - -
Vimu10g01712 331 SUPERFAMILY NAC domain 52 209 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01712 Vimu-Chr10 23596647 23597809 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01712 52 326 NAC Transcription Factor Family AT1G01720 61.092 5.33e-119 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vimu10g01712 NAM 6.7e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01712 - - gmx:100814504 469.544