Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01710 ATGAAGAGTGAATTAGAGTTGCCACCAGGGTTCAGGTTTCACCCCACGGATGATGAGTTGGTGAACCATTATCTTTGTAGGAAATGCGCTGGTCAACCAATTGCTGTTCCTATCATCAAAGAGGTCGATTTGTACAAGTTTGATCCATGGCAGCTTCCAGAAATTGGATTTTACGGCGAGAAAGAATGGTACTTCTTTTCTCCTCGGGATCGCAAATACCCCAACGGCTCACGGCCGAATCGGGCCGCCGGAAGTGGGTATTGGAAAGCCACCGGCGCCGATAAACCGATCGGAAAGCCGAAGGCGCTTGGGATAAAGAAAGCTCTGGTTTTTTACTCGGGAAAAGCCCCCAAAGGAGAGAAAACCAATTGGATCATGCACGAATATCGACTGGCCAATGTTGACCGATCAGCCTCCAAGAAAAATAACAACCTGAGGCTTGACGATTGGGTTTTGTGTCGAATTTACAACAAGAAAGGGAAGATTGAGAAATACAACACGGGGACACCGAAATCGGAGACTGGGGTGGTTTATAATTTCGAACATGAGACGAAGCCGGTGATTGAGAAGCTTGGGAATGAGCAATTGTTTATGGATAGTTCAGATTCGATGCATAGGTTGCAGAGTGAGTCGAGCGGTTCAGAGCAGGTGGTTTCGCCGGACGTGAGGTGGGAGAGAGAGGTGCAGAGCCAGCCGAAATGGAATGACATAGGCCTACAGCTTGAAAACGCGTTTGATTTTCAATACAATTACTTTGACAGCAATAACCTTCCGGTGGATGACCCTTTTGGGAGTGTTGAGTACCCCTTGCAGGACGTGCTCATGGAAGCCCTATTGATGTGA 843 0.4781 MKSELELPPGFRFHPTDDELVNHYLCRKCAGQPIAVPIIKEVDLYKFDPWQLPEIGFYGEKEWYFFSPRDRKYPNGSRPNRAAGSGYWKATGADKPIGKPKALGIKKALVFYSGKAPKGEKTNWIMHEYRLANVDRSASKKNNNLRLDDWVLCRIYNKKGKIEKYNTGTPKSETGVVYNFEHETKPVIEKLGNEQLFMDSSDSMHRLQSESSGSEQVVSPDVRWEREVQSQPKWNDIGLQLENAFDFQYNYFDSNNLPVDDPFGSVEYPLQDVLMEALLM 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01710 280 Gene3D NAC domain 16 163 IPR036093 GO:0003677|GO:0006355
Vimu10g01710 280 FunFam NAC transcription factor 16 162 - -
Vimu10g01710 280 ProSiteProfiles NAC domain profile. 7 158 IPR003441 GO:0003677|GO:0006355
Vimu10g01710 280 SUPERFAMILY NAC domain 4 158 IPR036093 GO:0003677|GO:0006355
Vimu10g01710 280 PANTHER NAC TRANSCRIPTION FACTOR 56 7 201 - -
Vimu10g01710 280 Pfam No apical meristem (NAM) protein 8 131 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01710 Vimu-Chr10 23584399 23585408 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01710 1 275 NAC Transcription Factor Family AT1G01720 61.775 5.59e-120 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vimu10g01710 NAM 5.7e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01710 - - gmx:100814504 474.937