Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01698 ATGCTCGGTTTCTCTCAGTTCTCACGCATTGTCGGTGTGTTGGTCGTTCTCGTTCTGTCATCTTCACTCTCGTTGTCGCGGTGGGTTTCTGTGAGTTCTCACTTTCGCTGTCACGCTGAGTTTCTCTCAGTTCTGAGGCGTTGTCGCCGCTGCACCGAAACCCTAAAGAAGGAGAGCCTTCGTCTTCCCGCTAACCACCATGGTTGGATCTCCATTTCTGCAATTCCAGAACCTTCTTCTTCCTTTTTGTTTTTCTCATATTTGGATGTCATTTTCTTGCAGACATTCAAGCGCAGGAATGGAGGCCGCAACAAGCACGGCCGCGGCCACGTCAAATTCATCCGATGCTCCAACTGCGGCAAATGCTGCCCTAAGGACAAGGCAATCAAAAGATTTCTGGTGAGGAACATTGTTGAGCAGGCTGCAGTTAGAGATGTGCAGGAGGCTTGCGTTTATGAACAATACACGCTTCCCAAATTGTATGTAAAGATGCAGTATTGTGTTTCCTGTGCCATCCACTCTCACGTTGTTAGGGTTCGATCCCGCACTGACCGGAGGAAGCGTGACCCTCCTCAGCGATTCGTCAGGCGCAGGGATGATGCTCCAAGGCCTGGTCAGCCTGGTCAAGCACCTCGTCCTGCTGGTGCAGGAGCTCCTGTCCGAACTTGA 669 0.5142 MLGFSQFSRIVGVLVVLVLSSSLSLSRWVSVSSHFRCHAEFLSVLRRCRRCTETLKKESLRLPANHHGWISISAIPEPSSSFLFFSYLDVIFLQTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYEQYTLPKLYVKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFVRRRDDAPRPGQPGQAPRPAGAGAPVRT 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01698 222 FunFam 40S ribosomal protein S26 94 207 - -
Vimu10g01698 222 Pfam Ribosomal protein S26e 95 199 IPR000892 GO:0003735|GO:0005840|GO:0006412
Vimu10g01698 222 Gene3D Ribosomal protein S26e 94 207 IPR038551 -
Vimu10g01698 222 MobiDBLite consensus disorder prediction 180 222 - -
Vimu10g01698 222 MobiDBLite consensus disorder prediction 183 203 - -
Vimu10g01698 222 PANTHER 40S RIBOSOMAL PROTEIN S26 95 216 IPR000892 GO:0003735|GO:0005840|GO:0006412
Vimu10g01698 222 ProSitePatterns Ribosomal protein S26e signature. 166 173 IPR000892 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01698 Vimu-Chr10 23442677 23449508 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01698 95 209 Cytoplasmic Ribosomal Protein Gene Family AT2G40590 84.348 6.14e-69 206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01698 K02976 - qsa:O6P43_014831 214.927