Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01686 ATGGAACCGTGGGGTGCTCATCATCGAGTCATGTTCATTAGTCAGCACGAGGAGGATGGAACTCCTTCTGATACTTCTAAGGGAGAGGAATCAAATGATGAAGAAGAAAAAATCGTCAAAGTTGAACCCGCCTTTGTGCCAGAAATTAAGAAAAGGAAACGCCTTAGCCTTAGTCAGCTTAAAGAAGTGAAAGGAGAATCATGTGGGAAGCAAAGCAGTAGCAAGCTTAAAAAGAAGAAGAATGAAAGTAGAGACAGATGGTCAGCTGAGAGGTATCAGTTGGCTGAGCAAAACATGTGGGAAGTATTAAAGTCTGAAGGGGCAACATTTGAAAACCCGATAACCCGACCTGCACTAAGATTAGCTGCTCGCAAACACATTGGTGATACTGGACTTTTAGACCACTTACTGAAGCACATTGACGGTAAAGTGGCACCTGGAGGTACTGAGCGATTCCGAAGATGGTTCAACACCAATGGAATCATGGAGTATTGGTTAGAGAGTGCTGACTTGGACAAGGTGCGCCAGGAGGCTGGTGTGCAGGACCCTTACTGGATACCACCATCTACATATAGGGCAGGCGGTGCACCCCCTCAGAATATTGATTCTTCTGTTGAATTGAAACAGCTTAAAATAGAATTGGCGCAAATGAAGAAAGATATGCATGAGCTCATTTCCATGAAGGAAGAAAAAAGTGATATTAATACGATGGAGGAGACCTACAAGGATTTTGTTAAGTGGAAAGCTATGACTGACCATCGCCTTACTGAAATCATTAATTCTTTGAAGGGTTTGCAGGGGAAATATGGTGAATTGATGATTTGGAAAACTAAAGTTGAGCAACAACTTGCAGAAATAACTAATAAATTGAATGATCTTCAAGCATCTAGGGAGTGCACCACTTTTAGTCCTCCTTCGGAAAGGTGGAAAGATTGGATAGAGAGCACTAACCTAGACAATATTCAGGAAGATGCATTTGCAACTTGGATTGGGAATCCAGAACTACTTAATGTCCCACCAGAGGTTATACCTGAAGATCTCAACACAGCCATACCAACACAGCCACTCAATGAGGAACTGACCAAGAAGAGCGATATGCTGGAACTGGAACCTGTTAGACTAGAAGATCAACCCAATGTGACCCCCGATTCTTCTGCAACTGTTAATTCGAAGTCAGACCTTGACAACTCATTGATTATGTTTCAGGAAATGCTTATGGATTTATACAAATGGAAAGAAAAAATGGAACAGCAGCTGATGGAGGTGTCAAATACTGTATATGGTATGCTGGCAATGAAGTAG 1302 0.4217 MEPWGAHHRVMFISQHEEDGTPSDTSKGEESNDEEEKIVKVEPAFVPEIKKRKRLSLSQLKEVKGESCGKQSSSKLKKKKNESRDRWSAERYQLAEQNMWEVLKSEGATFENPITRPALRLAARKHIGDTGLLDHLLKHIDGKVAPGGTERFRRWFNTNGIMEYWLESADLDKVRQEAGVQDPYWIPPSTYRAGGAPPQNIDSSVELKQLKIELAQMKKDMHELISMKEEKSDINTMEETYKDFVKWKAMTDHRLTEIINSLKGLQGKYGELMIWKTKVEQQLAEITNKLNDLQASRECTTFSPPSERWKDWIESTNLDNIQEDAFATWIGNPELLNVPPEVIPEDLNTAIPTQPLNEELTKKSDMLELEPVRLEDQPNVTPDSSATVNSKSDLDNSLIMFQEMLMDLYKWKEKMEQQLMEVSNTVYGMLAMK 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01686 433 Coils Coil 276 296 - -
Vimu10g01686 433 MobiDBLite consensus disorder prediction 11 43 - -
Vimu10g01686 433 MobiDBLite consensus disorder prediction 1 43 - -
Vimu10g01686 433 MobiDBLite consensus disorder prediction 60 88 - -
Vimu10g01686 433 Coils Coil 200 227 - -
Vimu10g01686 433 PANTHER PROTEIN DYAD 2 431 IPR044221 GO:0007131|GO:0051177|GO:0051321
Vimu10g01686 433 MobiDBLite consensus disorder prediction 71 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01686 Vimu-Chr10 23045311 23047393 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01686 86 167 PHD Transcription Factor Family AT5G22260 40.964 2.90e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01686 - - gmx:100806484 761.525